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BiaPyX
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BiaPy
Open source Python library for building bioimage analysis pipelines
https://BiaPyX.github.io
MIT License
123
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28
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New data preprocessing notebook
#101
AAitorG
closed
1 month ago
1
save patch only if empty and concatenate all points once
#100
ClementCaporal
closed
1 month ago
0
Use as_completed in the ThreadPoolExecutor detection and print exception
#99
ClementCaporal
closed
1 month ago
0
Save detected points in patch to a separate file with global coordinates
#98
ClementCaporal
closed
1 month ago
0
Add GRN, ConvNeXtBlock_V2 and UpConvNeXtBlock_V2 blocks
#97
anepaniagua
closed
1 month ago
0
Update central point dilation to use ellipse footprint
#96
ClementCaporal
closed
2 months ago
0
resunet++ issue due to layer normalization changes
#95
danifranco
closed
2 months ago
3
TEST.REUSE_PREDICTIONS is loading all images
#94
danifranco
closed
2 months ago
1
Add zoom config in preprocessing when using per_patch
#93
ClementCaporal
closed
2 months ago
4
Avoid loading the entire data to create instance masks
#92
danifranco
closed
2 months ago
1
Speed up prediction by chunks
#91
danifranco
opened
2 months ago
0
New super-resolution metrics (for train and test)
#90
IvanHCenalmor
closed
2 months ago
0
Include new model U-NeXt.
#89
anepaniagua
closed
3 months ago
0
Add indentation where needed in process sample by chunks
#88
ClementCaporal
closed
3 months ago
0
Include new model U-NeXt.
#87
anepaniagua
closed
3 months ago
0
Add option to choose metrics and repare some of the losses
#86
danifranco
closed
2 months ago
2
Update notebooks with visualization and inference cells.
#85
anepaniagua
closed
3 months ago
0
CLI installation of Biapy (torch) for MacOS: Docs update
#84
Mohinta2892
closed
3 months ago
5
Fix outdata_shape when C is not last dimension
#83
ClementCaporal
closed
4 months ago
0
Support for patching over multiple datasets in Zarrs
#82
Mohinta2892
closed
3 months ago
2
Memory error in UNET prediction with patches
#81
mcblache
closed
4 months ago
7
error during TEST/INFERENCE using percentile normalization in detection workflow [bug]
#79
pr4deepr
closed
4 months ago
9
documentation suggestion
#78
pr4deepr
closed
5 months ago
1
bug: import error: pytorch_msssim
#77
pr4deepr
closed
5 months ago
1
I2i development
#76
danifranco
closed
5 months ago
0
Add more options to select patches for training
#75
danifranco
closed
1 month ago
2
bug: Biapy crashes with detection workflow on latest branch
#74
pr4deepr
closed
6 months ago
1
running biapy after pip install
#73
pr4deepr
closed
4 months ago
6
Incorrect number of epochs on metric plot
#72
iarganda
closed
6 months ago
1
C-channel-only instance segmentation
#71
iarganda
closed
6 months ago
0
Notebooks update
#70
lenkaback
closed
7 months ago
0
Link to templates from Docs broken for Super-resolution
#69
Mohinta2892
closed
7 months ago
1
Multi thread detection
#68
ClementCaporal
closed
7 months ago
1
Detection could be multi threaded
#67
ClementCaporal
closed
7 months ago
0
Merge super resolution branch
#66
danifranco
closed
7 months ago
0
Fix bug in base_workflow.py
#64
gnodar01
closed
7 months ago
2
Rotation 90
#63
danifranco
closed
7 months ago
0
Allow classes into instance segmentation workflow
#62
danifranco
closed
7 months ago
1
Remove imgaug dependency
#61
danifranco
opened
8 months ago
3
Wrong net architecture in 3D Classification notebook
#59
iarganda
closed
8 months ago
2
Error in 3D classification notebook
#58
iarganda
closed
8 months ago
1
check in advance if df_patch is none
#57
ClementCaporal
closed
8 months ago
0
check if detection is not null when creating dataframe.
#56
ClementCaporal
closed
8 months ago
0
Error when first detection df_patch is null
#55
ClementCaporal
closed
8 months ago
0
add overlap when splitting z dimension
#54
ClementCaporal
closed
8 months ago
0
Fix patch position and overlap
#53
ClementCaporal
closed
8 months ago
0
Merging Aitor changes (preprocessing)
#52
danifranco
closed
8 months ago
0
New data preprocessing
#51
AAitorG
closed
8 months ago
0
Possible Patch related errors for detection
#50
ClementCaporal
closed
8 months ago
12
add use case of zarr with groups
#49
ClementCaporal
closed
8 months ago
0
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