issues
search
BiomedicalMachineLearning
/
stLearn
A novel machine learning pipeline to analyse spatial transcriptomics data
Other
190
stars
25
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
save anndata object to h5ad file
#262
rialc13
closed
9 months ago
2
How to get the clade no.s after generating trajectory plot
#261
rialc13
closed
6 months ago
3
Is pseudoroot & iroot the same?
#260
rialc13
closed
9 months ago
1
How to add my own LR pair?
#259
Knight1995
closed
11 months ago
4
st.add.image throwing error 'spatial/tissue_lowres_image.png' does not end on a valid extension'
#258
rialc13
closed
11 months ago
5
Allow saving tiles as PNG images in `stlearn.pp.tiling`
#257
jbschiratti
closed
9 months ago
1
st.spatial.trajectory.pseudotimespace_global()
#256
yandouwahhh
closed
11 months ago
2
Dimension of 'distance' in LR permutation test
#255
joan-yanqiong
closed
6 months ago
1
st.spatial.trajectory.pseudotimespace_global()
#254
onionsci
closed
11 months ago
9
Error in the step to stack horizontally 2 images from section 1 and section 2 in-house datasets
#253
tyaoi
closed
11 months ago
1
st.pl.cluster_plot
#252
ZJU-TingYun
closed
11 months ago
1
stLearn Usage
#251
rialc13
closed
11 months ago
14
diameter size in xenium tutorial
#250
revolvefire
closed
9 months ago
4
Installation issue on Macbook M1
#249
Kennyluo4
closed
1 year ago
2
Some questions about CCI's Visualisations
#248
ShawnXzzz
closed
6 months ago
0
about "st.pl.trajectory.tree_plot" problem
#247
chang202308
closed
9 months ago
7
st.spatial.trajectory.pseudotime convergence error
#246
meaksu
closed
9 months ago
1
"available_paths" not available
#245
QuinceyLv
closed
9 months ago
1
preprocessing steps
#244
derekrusso
closed
9 months ago
1
st.pl.trajectory.tree_plot issue
#243
meaksu
closed
1 year ago
1
About Trajectory Analysis
#242
evenDDDDD
closed
9 months ago
1
AttributeError: 'NoneType' object has no attribute **'_get_renderer'
#241
Ding7928
closed
9 months ago
2
AttributeError when adding annotation to clusters in trajectory analysis
#240
fuerzhou
closed
1 year ago
4
installation error
#239
ayusyarif
closed
9 months ago
1
resize returns a copy
#238
psl-schaefer
closed
9 months ago
1
Diagnostic plot - data does not have "nonzero-median"
#237
Laura-Waechter
closed
6 months ago
2
Issue with Harmonypy
#236
RubyLiu-2
closed
9 months ago
3
Reading in MERFISH data gives back IndexError: positional indexers are out-of-bounds.
#235
Laura-Waechter
closed
9 months ago
4
Problem with plotting "Seurat Cluster" in "stlearn" object
#234
suvranath1
closed
1 year ago
5
Does stlearn support customly defined celltype in trajectory analysis?
#233
QuinceyLv
closed
1 year ago
6
Problem with creating "stlearn object"
#232
suvranath1
closed
1 year ago
4
Bump flask from 2.0.3 to 2.3.2 in /stlearn/app
#231
dependabot[bot]
closed
1 year ago
0
same cell type in cci
#230
jinyuanchun
closed
6 months ago
2
changing default color of cells - st.pl.cluster_scatter
#229
vkjain006
closed
1 year ago
3
How to get the normalized expression data and spot_id for the spots contained in each crade in the spatial trajectory, and how to visualize these spots.
#228
tyaoi
closed
1 year ago
1
Can stLearn analyze the SpaceRanger2 data based on CytAssist-Visium FFPE ?
#227
tyaoi
closed
1 year ago
2
error in st.spatial.trajectory.pseudotime
#226
sokratiag
closed
1 year ago
3
TypingError: Failed in nopython mode pipeline (step: nopython frontend)
#225
jmzhang1911
closed
1 year ago
14
TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases
#224
wang0430
closed
1 year ago
2
TypeError: metaclass conflict
#223
tyaoi
closed
1 year ago
4
cell type specific LR pairs---questions
#222
jinyuanchun
closed
6 months ago
0
papers cited stlearn method
#221
LipingChen0607
closed
1 year ago
2
Fail to read Space Ranger output file with stlearn.Read10X.
#220
jingwyang
closed
1 year ago
2
Error: "array_row" not found during SME
#219
bmlett
closed
1 year ago
9
How to show figure in python console
#218
Feng-Zhang
closed
1 year ago
2
st.pl.ccinet_plot index error
#217
lhock17
closed
1 year ago
6
st.pl.trajectory.tree_plot not show cropped image for each node
#216
xiaojjia
closed
1 year ago
2
Cci dev
#215
BradBalderson
closed
1 year ago
0
Problem with st.tl.cci.run_cci()
#214
xfchen0912
closed
1 year ago
7
Cci dev
#213
duypham2108
closed
1 year ago
0
Previous
Next