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CCBR
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Dockers
A collection of Dockerfiles to facilitate reproducibility across computing environments.
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fix: use new base image for multiqc docker
#39
kelly-sovacool
closed
2 weeks ago
1
ci: use dockerhub-description action
#38
kelly-sovacool
closed
3 weeks ago
1
consider docker release cycle
#37
kelly-sovacool
opened
3 weeks ago
2
reduce size of base image
#36
kelly-sovacool
opened
3 weeks ago
0
upgrade base ubuntu container to v7
#35
kelly-sovacool
closed
1 month ago
0
programmatically add link to github repo in dockerhub description
#34
kelly-sovacool
closed
3 weeks ago
3
set $PYTHONPATH in base container
#33
kelly-sovacool
closed
1 month ago
1
Add salmon to base image
#32
kopardev
closed
1 month ago
0
Fix rseqc path
#31
kelly-sovacool
closed
7 months ago
0
feat: create manorm container
#30
kelly-sovacool
closed
11 months ago
0
feat: create container for diffbind
#29
kelly-sovacool
closed
11 months ago
0
feat: docker container for consensus peaks process in chipseq
#28
kelly-sovacool
closed
11 months ago
0
feat: create docker for ChIPseeker processes
#27
kelly-sovacool
closed
1 year ago
0
feat: create separate containers for homer & meme-suite
#26
kelly-sovacool
closed
1 year ago
0
Create container w/ ucsc-bedsort
#25
kelly-sovacool
closed
9 months ago
0
feat: install biopython & remove R in base container
#24
kelly-sovacool
closed
9 months ago
0
Install mimseq v1.3.7 from mamba
#23
kelly-sovacool
closed
1 year ago
0
feat: add khmer container
#22
kelly-sovacool
closed
1 year ago
0
feat: create container for cvbio
#21
kelly-sovacool
closed
1 year ago
0
New manual action to build & push docker containers
#20
kelly-sovacool
closed
1 year ago
0
feat: container with picard from bioconda
#19
kelly-sovacool
closed
1 year ago
0
Install conda/mamba in base container
#18
kelly-sovacool
closed
1 year ago
0
Update picard docker
#17
kelly-sovacool
closed
1 year ago
0
feat: unified template resource
#16
kopardev
closed
1 year ago
0
adding uropa docker
#15
kopardev
closed
1 year ago
0
Create Docker for FRiP calculation in CHAMPAGNE
#14
kelly-sovacool
closed
1 year ago
1
Duplicate Dockerfile.template in scripts/ and resources/
#13
kelly-sovacool
closed
1 year ago
0
Upgrade to Deeptools v3.5.3
#12
kelly-sovacool
closed
1 year ago
1
container for ngs-qc generator
#11
kelly-sovacool
closed
1 year ago
1
feat: create ccbr_macs2 Docker
#10
kelly-sovacool
closed
1 year ago
5
CI workflow to run `buildnpush` script when Docker files change
#9
kelly-sovacool
closed
1 year ago
3
macs2 dedup container with bedtools
#8
kelly-sovacool
closed
1 year ago
1
macs2 container: simplify name & tag
#7
kelly-sovacool
closed
1 year ago
2
Update ccbr_preseq with Python3, remove helper scripts
#6
kelly-sovacool
closed
1 year ago
1
Install phantompeakqualtools instead of copying scripts?
#5
kelly-sovacool
closed
1 year ago
3
Error pulling ccbr_preseq -- needs `latest` tag
#4
kelly-sovacool
closed
1 year ago
2
Atacseq dev branch
#3
kopardev
closed
4 years ago
0
Test2
#2
kopardev
closed
4 years ago
0
Kraken2
#1
kopardev
closed
4 years ago
0