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CDCgov
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ww-inference-model
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
https://cdcgov.github.io/ww-inference-model/
Apache License 2.0
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Hot fix warn if data exceeds forecast date
#201
kaitejohnson
closed
1 month ago
2
Modify `plot` methods
#200
kaitejohnson
closed
4 weeks ago
1
hot-fix initialization misspecifies parameter name for `error_rt_subpop`
#199
kaitejohnson
closed
1 month ago
4
Alternative install of cmdstan using cmdstanr::*
#198
gvegayon
closed
1 month ago
6
Rename `validate_both_datasets()` to `validate_data_jointly()`
#197
kaitejohnson
closed
2 weeks ago
0
Make reference subpopulation configurable by the user
#196
kaitejohnson
opened
1 month ago
0
`import` or qualify namespace for `desc` and `formalArgs`
#195
dylanhmorris
opened
1 month ago
0
Improve error messaging for the various no wastewater cases
#194
kaitejohnson
opened
1 month ago
0
Remove the snapshot test, fix a few other bugs
#193
dylanhmorris
closed
1 month ago
0
Set up release and dev pkgdown sites
#192
kaitejohnson
closed
1 month ago
5
Hot fix validate pmf
#191
kaitejohnson
closed
1 month ago
1
add multiple os to matrix strategy
#190
kaitejohnson
closed
1 month ago
11
Run `R CMD check` on Windows and macOS as well as Ubuntu in CI
#189
dylanhmorris
closed
1 month ago
7
move `cmdstanr` to suggests
#188
gvegayon
closed
1 month ago
5
Unable to find include files when running through the worked example
#187
arranhamlet
opened
1 month ago
20
Meta v1.2 Scope out needs to submit package to cran
#186
kaitejohnson
opened
1 month ago
1
Add subpopulation count data to model/ `generate_simulated_data()` function
#185
kaitejohnson
opened
1 month ago
0
Add outputs to `generate_simulated_data()
#184
kaitejohnson
closed
3 weeks ago
0
Only run post-page-artifact job on PRs
#183
dylanhmorris
closed
1 month ago
1
Build link comment in PRs: update comment instead of re-creating on rebuilds
#182
dylanhmorris
closed
1 month ago
2
Adding the post-page-artifact job
#181
gvegayon
closed
1 month ago
4
Preview github-pages on PRs
#180
gvegayon
closed
1 month ago
0
Fix formatting so functions link
#179
kaitejohnson
closed
1 month ago
5
171 add links
#178
kaitejohnson
closed
2 months ago
0
2024-09-19 update : adding spatial scenes.
#177
cbernalz
opened
2 months ago
0
Fix low ESS warning messaging in CI
#176
kaitejohnson
opened
2 months ago
0
174 cmdstanr sample args
#175
kaitejohnson
closed
1 month ago
12
Most if not all of the arguments to `cmdstanr` `sample()` should be optionally configurable from the `wwinference()` interface
#174
dylanhmorris
closed
1 month ago
1
Exploring scenarios for when IID inference model fails when compared to others
#173
cbernalz
opened
2 months ago
0
Add plotting functions to spatial-main
#172
kaitejohnson
opened
2 months ago
0
Add links to package functions in vignettes
#171
kaitejohnson
closed
1 month ago
6
Tweaks to main vignette
#170
kaitejohnson
closed
2 months ago
1
fix rendering to katex, add mathcal Rt to vignette
#169
kaitejohnson
closed
2 months ago
1
Change how offsets are handled
#168
dylanhmorris
closed
2 months ago
0
Update _pkgdown.yml
#167
kaitejohnson
closed
2 months ago
2
Improve package provided GI using `primarycensoreddist`
#166
kaitejohnson
opened
2 months ago
1
Solution to L_Omega initialization
#165
kaitejohnson
closed
2 months ago
1
163 expand R version
#164
kaitejohnson
closed
2 months ago
2
Expand compatible R versions
#163
kaitejohnson
closed
2 months ago
1
Only allow users to get "predicted_counts" and "global_rt" if not fitting to wastewater data
#162
kaitejohnson
opened
2 months ago
0
Add error message for plotting functions
#161
kaitejohnson
opened
2 months ago
0
Add contributors
#160
kaitejohnson
closed
2 months ago
1
Kj tweaks to 123
#159
kaitejohnson
closed
2 months ago
0
Restructure hierarchical estimation based on reference subpopulation
#158
kaitejohnson
closed
1 month ago
14
Making a simulation study script for spatial ww model
#157
cbernalz
opened
2 months ago
1
update author list
#156
kaitejohnson
closed
2 months ago
0
Caution box render issue on website
#155
athowes
opened
2 months ago
1
Add functionality to handle no wastewater data
#154
kaitejohnson
closed
1 month ago
0
Adding new class and method for get_draws
#153
gvegayon
closed
2 months ago
1
Spatial branch for merge of main
#152
cbernalz
closed
2 months ago
0
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