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CDCgov
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ww-inference-model
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
https://cdcgov.github.io/ww-inference-model/
Apache License 2.0
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Merging Main into Spatial Main
#151
cbernalz
closed
2 months ago
0
Merging Main into Spatial-Main
#150
cbernalz
closed
2 months ago
0
Refactor hierarchical site-level estimation to estimate `n_subpops-1` deviations from the "reference" subpopulation
#149
kaitejohnson
closed
1 month ago
6
Add hex logo to repo
#148
kaitejohnson
closed
2 months ago
12
Reconsider output structure of function `get_draws_df()`
#147
kaitejohnson
closed
2 months ago
8
Set seeds in test_get_stan_data
#146
dylanhmorris
closed
2 months ago
0
Discuss future of MCMC snapshot test in `test_ww_model.R`
#145
dylanhmorris
opened
2 months ago
1
Update NEWS.md
#144
gvegayon
closed
2 months ago
0
2024-09-03 update : adding spatial vignette.
#143
cbernalz
closed
2 months ago
2
Fix `test_get_stan_data` so random failure doesn't occur
#142
kaitejohnson
closed
2 months ago
2
Vignette tweaks
#141
kaitejohnson
closed
2 months ago
0
Add action to automatically run pre-commit if fails
#140
kaitejohnson
closed
1 month ago
1
Add GH actions to automatically commit autofixes from `pre-commit`
#139
kaitejohnson
opened
2 months ago
6
Vignette showing how to modify the model
#138
kaitejohnson
opened
2 months ago
0
Vignette showing how to evaluate the added value of data
#137
kaitejohnson
opened
2 months ago
0
Come up with a way to handle if `sum(site_pop) > total_pop`
#136
kaitejohnson
opened
2 months ago
2
Tweaks to model definition
#135
kaitejohnson
closed
2 months ago
0
Tweaks to model definition
#134
kaitejohnson
closed
2 months ago
0
Cite Kissler paper for triangular hinge function for viral kinetics
#133
kaitejohnson
opened
2 months ago
0
Clarify language on "local" vs "global" variables
#132
kaitejohnson
opened
2 months ago
0
Clarify vignette outlier handling
#131
kaitejohnson
opened
2 months ago
0
Small tweaks to vignette
#130
kaitejohnson
closed
2 months ago
0
Simple installation vignette
#129
kaitejohnson
opened
2 months ago
2
Various bug fixes
#128
kaitejohnson
closed
2 months ago
1
Fix check for required wastewater columns
#127
kaitejohnson
closed
2 months ago
3
Fix NEWS.md
#126
kaitejohnson
closed
2 months ago
1
update vignette to reflect default NULL seed in mcmcoptions
#125
kaitejohnson
closed
2 months ago
0
Write additional tests for postprocessing
#124
kaitejohnson
opened
2 months ago
0
Vignette for 3 sims and 3 fits
#123
cbernalz
closed
2 months ago
0
Modify package to expect log scale concentration values and LODs
#122
kaitejohnson
closed
2 months ago
0
Expect log(conc) values instead of natural scale concentration values
#121
kaitejohnson
closed
2 months ago
0
update hierarchical estimate of sigma_site in `model_definition`
#120
kaitejohnson
closed
2 months ago
0
Fix documentation to reflect fix in hierarchical stdev in observation model
#119
kaitejohnson
closed
2 months ago
0
Structure of the NEWS.md file
#118
gvegayon
closed
2 months ago
2
Fix how hierarchical sd values are computed
#117
dylanhmorris
closed
2 months ago
4
Vignette with example pipeline fit to publicly available data
#116
kaitejohnson
opened
2 months ago
0
Add tests to make sure all function args are in fact configurable
#115
kaitejohnson
opened
2 months ago
0
Change names of PMFs
#114
kaitejohnson
closed
2 months ago
0
Fix ignored compute_likelihood bug
#113
dylanhmorris
closed
2 months ago
1
`compute_likelihood` flag returned by `get_mcmc_options` is ignored
#112
dylanhmorris
closed
2 months ago
0
Rename package data defined in `covid_pmfs.R`
#111
dylanhmorris
closed
2 months ago
0
Set up functionality to use pathfinder (for initialization or prototyping)
#110
kaitejohnson
opened
2 months ago
2
`get_ind_m` behavior and unit tests
#109
dylanhmorris
opened
2 months ago
0
Addressing R CMD check notes due to tidyeval syntax
#108
gvegayon
closed
2 months ago
20
R PRNG seeding when `generate_random_inits = TRUE`?
#107
dylanhmorris
closed
2 months ago
2
Do you need to set a starting seed for repeatability?
#106
akeyel
closed
1 month ago
2
Get rid of Rmd check messaging
#105
kaitejohnson
closed
2 months ago
1
2024-08-27 update : prep for inf. wout dist.
#104
cbernalz
closed
2 months ago
0
Add non-dev install instructions
#103
kaitejohnson
closed
2 months ago
0
Extra columns in wastewater data throws an error
#102
kaitejohnson
closed
2 months ago
1
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