issues
search
CDCgov
/
ww-inference-model
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
https://cdcgov.github.io/ww-inference-model/
Apache License 2.0
16
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Fix how hierarchical sd values are computed
#117
dylanhmorris
closed
1 month ago
4
Vignette with example pipeline fit to publicly available data
#116
kaitejohnson
opened
1 month ago
0
Add tests to make sure all function args are in fact configurable
#115
kaitejohnson
opened
1 month ago
0
Change names of PMFs
#114
kaitejohnson
closed
1 month ago
0
Fix ignored compute_likelihood bug
#113
dylanhmorris
closed
1 month ago
1
`compute_likelihood` flag returned by `get_mcmc_options` is ignored
#112
dylanhmorris
closed
1 month ago
0
Rename package data defined in `covid_pmfs.R`
#111
dylanhmorris
closed
1 month ago
0
Set up functionality to use pathfinder (for initialization or prototyping)
#110
kaitejohnson
opened
1 month ago
2
`get_ind_m` behavior and unit tests
#109
dylanhmorris
opened
1 month ago
0
Addressing R CMD check notes due to tidyeval syntax
#108
gvegayon
closed
1 month ago
20
R PRNG seeding when `generate_random_inits = TRUE`?
#107
dylanhmorris
closed
1 month ago
2
Do you need to set a starting seed for repeatability?
#106
akeyel
closed
2 weeks ago
2
Get rid of Rmd check messaging
#105
kaitejohnson
closed
1 month ago
1
2024-08-27 update : prep for inf. wout dist.
#104
cbernalz
closed
1 month ago
0
Add non-dev install instructions
#103
kaitejohnson
closed
1 month ago
0
Extra columns in wastewater data throws an error
#102
kaitejohnson
closed
1 month ago
1
Exclude data beyond forecast date automatically?
#101
kaitejohnson
opened
1 month ago
0
Sites shouldn't need to be sequentially ordered
#100
kaitejohnson
closed
1 month ago
1
Fix error messaging on insufficient hospital admissions duration
#99
kaitejohnson
closed
1 month ago
0
Fix `check_req_ww_cols_present`
#98
kaitejohnson
closed
1 month ago
4
Handle NAs in wastewater data
#97
kaitejohnson
closed
1 month ago
0
Adding Inferring correlation matrix without correlation function based off distance
#96
cbernalz
closed
1 month ago
0
Non-Dev Installation Instructions
#95
damonbayer
closed
1 month ago
0
Document package use cases
#94
kaitejohnson
opened
1 month ago
0
Allow the user to pass in weekly count data
#93
kaitejohnson
opened
1 month ago
3
Vignette showing how to troubleshoot convergence diagnostics
#92
kaitejohnson
opened
1 month ago
1
Vignette demonstrating how to adjust the default parameter values and delay distributions
#91
kaitejohnson
opened
1 month ago
0
Better documentation around modifying fitting specifications
#90
kaitejohnson
opened
1 month ago
0
Vignette showing how to evaluate model outputs using probabilistic scoring methods
#89
kaitejohnson
opened
1 month ago
0
Make clear in the vignette what output variables are in the `draws_df`, with option to allow user to specify desired outputs
#88
kaitejohnson
closed
1 month ago
1
Edit author list
#87
kaitejohnson
closed
1 month ago
0
Change output names
#86
kaitejohnson
closed
1 month ago
2
Switch to placing prior on and inferring `i/n` at the first observed timepoint
#85
dylanhmorris
closed
1 month ago
6
place a prior on and infer the last point in the exponential growth period, not the first
#84
dylanhmorris
closed
1 month ago
0
Merge `main` into `spatial-main`
#83
dylanhmorris
closed
1 month ago
0
Update `spatial-main` from `main`
#82
dylanhmorris
closed
1 month ago
1
Fix params docs in wwinference.R
#81
dylanhmorris
closed
1 month ago
0
Update pkgdown.yaml
#80
dylanhmorris
closed
1 month ago
0
Speed up website build in CI?
#79
dylanhmorris
opened
1 month ago
1
Update r-cmd-check.yaml
#78
dylanhmorris
closed
1 month ago
2
Modify `generate_simulated_data()` to add noise to R(t) on log scale
#77
kaitejohnson
opened
1 month ago
0
2024-08-22 update : preping testfile.
#76
cbernalz
closed
1 month ago
1
Adding an improved switch to go from spatial to non-spatial model in wwinference stan model
#75
cbernalz
closed
1 month ago
0
42 parameterize weekday effect with a dirichlet
#74
dylanhmorris
closed
1 month ago
4
Minor formatting changes
#73
akeyel
closed
1 month ago
0
Hot fix edits while reviewing
#72
kaitejohnson
closed
1 month ago
0
Rendered Stan docs
#71
seabbs
opened
1 month ago
0
Separate default prior values and user-specified parameter values
#70
kaitejohnson
opened
2 months ago
0
Is automated detection/flagging of suspected outliers in scope for this package?
#69
dylanhmorris
opened
2 months ago
0
Update covid infection to admissions delay
#68
kaitejohnson
opened
2 months ago
0
Previous
Next