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COBREXA
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COBREXA.jl
COnstraint Based Reconstruction and EXascale Analysis (in Julia)
https://cobrexa.github.io/COBREXA.jl/stable/
Apache License 2.0
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use a parallel reduction for `isozyme_amount_variables`
#76
exaexa
closed
2 days ago
3
add a few packages to the docker
#75
exaexa
closed
3 weeks ago
1
implement gapfilling
#74
exaexa
closed
3 weeks ago
2
Gap-filling / knock-in support
#73
oxinabox
closed
3 weeks ago
2
implement set_start_variable_vector!
#72
exaexa
opened
4 weeks ago
1
bump v2.2.2
#71
exaexa
closed
4 weeks ago
1
refer to the `@edit` macro
#70
exaexa
closed
4 weeks ago
1
document cyclefreeflux
#69
exaexa
closed
4 weeks ago
1
document ecFVA
#68
exaexa
closed
4 weeks ago
1
Feature: enzyme constrained FVA function
#67
HettieC
closed
1 month ago
3
MAT model not loading
#66
HettieC
closed
1 month ago
1
stabilize the FBC interface
#65
exaexa
closed
2 months ago
2
improve the type&conversion handling around IO
#63
exaexa
closed
2 months ago
2
Saving StandardModel makes a model in wrong format
#62
HettieC
closed
2 months ago
4
feature request: gp_sampler and opt_gp_sampler
#61
oxinabox
opened
2 months ago
4
try switching the tutorials from glpk to highs, see what happens
#60
exaexa
closed
2 months ago
10
document why people should use cobrexa
#59
exaexa
closed
2 months ago
6
Documentation request: Comparisons to cobrapy, COBRA.jl, RAVEN etc
#58
oxinabox
closed
2 months ago
1
Switch all documentation over from GLPK to HiGHs
#57
oxinabox
closed
2 months ago
14
Fix warning box in mmdf section
#56
stelmo
closed
2 months ago
1
fix README a lil bit
#55
exaexa
closed
2 months ago
1
implement bounds removal (helpful for sign splitting)
#54
exaexa
closed
2 months ago
1
fix sign-splitting of unbounded values
#53
exaexa
closed
3 months ago
1
Docs: Refer to the possibility to use `@edit` in julia session to see what the code does
#52
exaexa
closed
4 weeks ago
0
allow direct CTs in cFBA
#51
exaexa
closed
2 months ago
2
allow easier default bounds for community building
#50
exaexa
closed
3 months ago
1
dodge julia 1.10 coverage issues
#49
exaexa
closed
4 months ago
0
fix a corner case in community builder
#48
exaexa
closed
4 months ago
0
trigger CI on tags instd of releases (seems more reliable)
#47
exaexa
closed
4 weeks ago
2
check if docker containers are tagged properly on releases
#46
exaexa
closed
4 weeks ago
2
TagBot trigger issue
#45
JuliaTagBot
closed
4 months ago
9
remove doc generation from a file that no longer exists
#44
exaexa
closed
4 months ago
1
hotpatch: this is no longer TODO
#43
exaexa
closed
4 months ago
0
remove obsolete data loading from tests, add cph to misc.jl
#42
exaexa
closed
4 months ago
1
add support for loading the coupling bounds from FBC
#41
exaexa
closed
4 months ago
2
CompatHelper: bump compat for AbstractFBCModels to 0.3, (keep existing compat)
#40
github-actions[bot]
closed
4 months ago
1
efficiency: switch the larger sums to CT's pairwise sum
#39
exaexa
closed
4 months ago
1
`sum`s should use the pairwise reduce
#38
exaexa
closed
4 months ago
0
finalize the examples
#37
exaexa
closed
5 months ago
1
add notes about forwarding the project configuration
#36
exaexa
closed
5 months ago
1
add CFF commentary
#35
exaexa
closed
1 month ago
3
add the leftover misc tests
#34
exaexa
closed
5 months ago
2
maintenance merge of the remainder of doc fixes
#33
exaexa
closed
5 months ago
0
Feature: start values for optimization problem
#32
stelmo
opened
5 months ago
5
doc fixes from #20
#31
exaexa
closed
5 months ago
1
source fixes from #20
#30
exaexa
closed
5 months ago
0
Feature: CycleFreeFluxes
#29
stelmo
closed
4 weeks ago
2
use the efficient JuMP substitutes, clean up the bounds transcription
#28
exaexa
closed
5 months ago
1
fix performance of stoichiometry conversion in flux_balance_constraints
#27
exaexa
closed
5 months ago
1
update github things
#26
exaexa
closed
6 months ago
0
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