CPTR-ReSeqTB UVP issues

CPTR-ReSeqTB / UVP

Mycobacterium tuberculosis next generation sequence analysis

MIT License

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issues

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gatk-register command not found

#35 RuanSpies21 opened 3 months ago
0
Exception in analysis

#34 alantsangmb opened 3 years ago
1
UVP terminates

#33 AmanuelZewdu opened 3 years ago
3
parse annotation error

#32 TimHHH opened 4 years ago
0
invalid literal for int() with base 10: '29.995328591049294\n'

#31 TimHHH opened 4 years ago
0
.fq.gz files not accepted for input

#30 TimHHH opened 4 years ago
0
gatk3/gatk3-register and gatk/gatk-register

#29 alantsangmb opened 4 years ago
2
Switching to unencumbered GATK 4.x

#28 tseemann opened 4 years ago
5
file directories

#27 alantsangmb closed 4 years ago
3
Config loading

#26 dfornika closed 4 years ago
0
Allow users to provide a config file when launching UVP

#25 dfornika closed 4 years ago
3
Version bump to v2.6.0

#24 dfornika closed 4 years ago
0
SNPs criteria

#23 alantsangmb closed 4 years ago
2
yaml problem

#22 RichardUABC opened 5 years ago
0
QC directory

#21 alantsangmb closed 5 years ago
2
SnpEff can't find NC_000962.genome

#20 elenamd opened 5 years ago
6
Portability & Project Structure

#19 dfornika closed 4 years ago
13
Edit suggested: Escape tab characters to resolve BWA error

#18 pvishwa2 closed 5 years ago
1
Move several .txt files to conf directory

#17 dfornika closed 5 years ago
2
Update readme.md

#16 hyunlee11037 closed 4 years ago
0
"Not species specific" when sample is Mycobacterium Tuberculosis

#15 matnguyen closed 5 years ago
5
Default threads should be 1 not 12

#14 tseemann closed 5 years ago
4
What LICENSE is this code released under?

#13 tseemann closed 5 years ago
1
Update READ.me

#12 elwinmartin closed 4 years ago
0
Don't put .txt files in the bin/ folder

#11 tseemann closed 4 years ago
3
Include reference genome or risk excluded locii mixup?

#10 tseemann closed 5 years ago
1
Which kraken database should we use?

#9 tseemann closed 5 years ago
2
Typo in docs

#8 tseemann closed 5 years ago
1
Please produce a conda package

#7 tseemann closed 4 years ago
13
Is this python 2 or 3 ?

#6 tseemann closed 5 years ago
3
Please use the python in the PATH first

#5 tseemann closed 5 years ago
1
rm: cannot remove ‘Results/test/kraken/kraken.txt’: No such file or directory

#4 matnguyen closed 5 years ago
2
Cannot generate GATK_Resilist.grp

#3 hyunlee11037 closed 5 years ago
5
fastQValidator subprocess call, OSError: [Errno 2] No such file or directory

#2 jwcodee closed 5 years ago
2
read config from a filepath relative to the script

#1 corburn closed 6 years ago
0