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Casal2
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CASAL2
Integrated Population Dynamics Model (Casal2)
https://casal2.github.io
GNU General Public License v2.0
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Adding migration process equivalent to Stock Synthesis 3
#427
SamikDatta
opened
2 weeks ago
1
Fix capped selectivity
#426
SamikDatta
opened
2 weeks ago
1
Add in an 'unbind<>' call for use when redefining input parameters in child classes
#425
alistairdunn1
opened
2 months ago
0
Casal2 Fails to Compile on Debian 12.5 with GCC 12.2.0
#424
Zaita
closed
4 months ago
1
Undefined behaviour when using vector.resize()
#423
Zaita
closed
4 months ago
1
Direct floating point equal comparisons
#422
Zaita
closed
4 months ago
1
Merge all changes from Alistair Dunn
#421
Zaita
closed
5 months ago
1
Casal2 - Fails to compile on GCC/G++ v13.1.1
#420
Zaita
closed
4 months ago
2
Updating the logistic selectivity
#419
agruss2
closed
1 year ago
1
Update code 202309
#418
agruss2
closed
1 year ago
0
ADD: new selectivity
#417
Craig44
closed
1 year ago
0
Simulating abundance or biomass observations with `@catchability.type = nuisance`
#416
Craig44
closed
4 months ago
1
update readme
#415
Craig44
closed
1 year ago
0
CASAL2 length based : min_length max_length ?
#414
fannyouzoulias
closed
1 year ago
2
ReportTabular for type selectivity in an age-based model when the selectivity is length based
#413
Craig44
closed
4 months ago
2
Category format and short hand syntax consideration
#412
Craig44
closed
4 months ago
1
Nuisance Qs with multiple Indicies
#411
Craig44
closed
1 year ago
0
Time-varying report broken
#410
Craig44
closed
1 year ago
0
Estimation of vector elements outside the tranformation, when only some elements of that vector are transformed, is not allowed
#409
alistairdunn1
opened
1 year ago
2
Selectivity class that can change parameterisation over time
#408
Craig44
closed
4 months ago
2
Casal2 needs to error out when there are multiple parameter transformations or time-varying blocks on a single addressable
#407
Craig44
opened
2 years ago
0
CategoryList report not compatiable with Casal2 R library function extract.mpd()
#406
Craig44
closed
2 years ago
5
Dirichlet multinomial
#405
NIWAFisheriesModelling
closed
2 years ago
1
Recruitment ycs syntax change 202208
#404
Craig44
closed
2 years ago
0
ADD: section in usermanual describing syntax changes between releases
#403
Craig44
closed
4 months ago
1
Migrate betadiff casal flags_off into Testmodels before moving out of repo.
#402
Craig44
closed
2 years ago
2
Dirichlet multinomial likelihood
#401
Craig44
closed
2 years ago
8
ADD fishing mortality process, plus improvements 202207
#400
Craig44
closed
2 years ago
0
ADD: length-based test case: simulated data from the SCI model.
#399
Craig44
closed
2 years ago
0
ADD tag test case sexed and unsexed.
#398
Craig44
closed
4 months ago
4
Age size observation 202206
#397
Craig44
closed
2 years ago
0
Add estimate starting values to the `estimate_summary` report
#396
Craig44
closed
2 years ago
1
Change ycs_values to be referenced by recruit year rather than spawning year (ycs_year)
#395
Craig44
closed
2 years ago
0
Sim casal2 202206
#394
Craig44
closed
2 years ago
1
Self test functionality idea/Alternatively Write a utility program
#393
Craig44
closed
4 months ago
1
Improve pseudo-observations for reporting output
#392
alistairdunn1
opened
2 years ago
0
Add Github actions to test base Casal2 R-library
#391
Craig44
closed
2 years ago
1
ADD casal2 compatibility check in the R-package to warn users if they should update their R package relative to the casal2.exe
#390
Craig44
closed
2 years ago
1
Flagging of penalties in the objective function
#389
Craig44
closed
2 years ago
1
Need to implement mcmc_fixed flag in @estimates
#388
Craig44
closed
2 years ago
0
Run profiles for multiple parameters
#387
Craig44
closed
4 months ago
1
Length based model 202204
#386
Craig44
closed
2 years ago
0
Verifies to add
#385
Craig44
closed
4 months ago
1
ADD initial mean length at age into the data table
#384
Craig44
closed
4 months ago
1
Automate Simulated observation reports
#383
Craig44
closed
2 years ago
1
AgeLength Data is incorrectly specified for the attached use case
#382
Craig44
closed
2 years ago
0
Test HMC algorithm
#381
Craig44
closed
2 years ago
1
Profiling with autodiff libraries errors out
#380
Craig44
closed
2 years ago
1
Initial Addressable transformation change
#379
Craig44
closed
2 years ago
0
Complete the comparisons of Casal2 and the NOAA stock assessment model comparison project(s)
#378
NIWAFisheriesModelling
closed
4 months ago
1
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