Casal2 CASAL2 issues - Githubissues

Casal2 / CASAL2

Integrated Population Dynamics Model (Casal2)

https://casal2.github.io

GNU General Public License v2.0

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Adding migration process equivalent to Stock Synthesis 3

#427 SamikDatta opened 2 weeks ago
1
Fix capped selectivity

#426 SamikDatta opened 2 weeks ago
1
Add in an 'unbind<>' call for use when redefining input parameters in child classes

#425 alistairdunn1 opened 2 months ago
0
Casal2 Fails to Compile on Debian 12.5 with GCC 12.2.0

#424 Zaita closed 4 months ago
1
Undefined behaviour when using vector.resize()

#423 Zaita closed 4 months ago
1
Direct floating point equal comparisons

#422 Zaita closed 4 months ago
1
Merge all changes from Alistair Dunn

#421 Zaita closed 5 months ago
1
Casal2 - Fails to compile on GCC/G++ v13.1.1

#420 Zaita closed 4 months ago
2
Updating the logistic selectivity

#419 agruss2 closed 1 year ago
1
Update code 202309

#418 agruss2 closed 1 year ago
0
ADD: new selectivity

#417 Craig44 closed 1 year ago
0
Simulating abundance or biomass observations with `@catchability.type = nuisance`

#416 Craig44 closed 4 months ago
1
update readme

#415 Craig44 closed 1 year ago
0
CASAL2 length based : min_length max_length ?

#414 fannyouzoulias closed 1 year ago
2
ReportTabular for type selectivity in an age-based model when the selectivity is length based

#413 Craig44 closed 4 months ago
2
Category format and short hand syntax consideration

#412 Craig44 closed 4 months ago
1
Nuisance Qs with multiple Indicies

#411 Craig44 closed 1 year ago
0
Time-varying report broken

#410 Craig44 closed 1 year ago
0
Estimation of vector elements outside the tranformation, when only some elements of that vector are transformed, is not allowed

#409 alistairdunn1 opened 1 year ago
2
Selectivity class that can change parameterisation over time

#408 Craig44 closed 4 months ago
2
Casal2 needs to error out when there are multiple parameter transformations or time-varying blocks on a single addressable

#407 Craig44 opened 2 years ago
0
CategoryList report not compatiable with Casal2 R library function extract.mpd()

#406 Craig44 closed 2 years ago
5
Dirichlet multinomial

#405 NIWAFisheriesModelling closed 2 years ago
1
Recruitment ycs syntax change 202208

#404 Craig44 closed 2 years ago
0
ADD: section in usermanual describing syntax changes between releases

#403 Craig44 closed 4 months ago
1
Migrate betadiff casal flags_off into Testmodels before moving out of repo.

#402 Craig44 closed 2 years ago
2
Dirichlet multinomial likelihood

#401 Craig44 closed 2 years ago
8
ADD fishing mortality process, plus improvements 202207

#400 Craig44 closed 2 years ago
0
ADD: length-based test case: simulated data from the SCI model.

#399 Craig44 closed 2 years ago
0
ADD tag test case sexed and unsexed.

#398 Craig44 closed 4 months ago
4
Age size observation 202206

#397 Craig44 closed 2 years ago
0
Add estimate starting values to the `estimate_summary` report

#396 Craig44 closed 2 years ago
1
Change ycs_values to be referenced by recruit year rather than spawning year (ycs_year)

#395 Craig44 closed 2 years ago
0
Sim casal2 202206

#394 Craig44 closed 2 years ago
1
Self test functionality idea/Alternatively Write a utility program

#393 Craig44 closed 4 months ago
1
Improve pseudo-observations for reporting output

#392 alistairdunn1 opened 2 years ago
0
Add Github actions to test base Casal2 R-library

#391 Craig44 closed 2 years ago
1
ADD casal2 compatibility check in the R-package to warn users if they should update their R package relative to the casal2.exe

#390 Craig44 closed 2 years ago
1
Flagging of penalties in the objective function

#389 Craig44 closed 2 years ago
1
Need to implement mcmc_fixed flag in @estimates

#388 Craig44 closed 2 years ago
0
Run profiles for multiple parameters

#387 Craig44 closed 4 months ago
1
Length based model 202204

#386 Craig44 closed 2 years ago
0
Verifies to add

#385 Craig44 closed 4 months ago
1
ADD initial mean length at age into the data table

#384 Craig44 closed 4 months ago
1
Automate Simulated observation reports

#383 Craig44 closed 2 years ago
1
AgeLength Data is incorrectly specified for the attached use case

#382 Craig44 closed 2 years ago
0
Test HMC algorithm

#381 Craig44 closed 2 years ago
1
Profiling with autodiff libraries errors out

#380 Craig44 closed 2 years ago
1
Initial Addressable transformation change

#379 Craig44 closed 2 years ago
0
Complete the comparisons of Casal2 and the NOAA stock assessment model comparison project(s)

#378 NIWAFisheriesModelling closed 4 months ago
1