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Clinical-Genomics-Lund
/
bonsai
Visualize and analyze resistance and outbreak of bacterial pathogen
https://bonsai-wgs.readthedocs.io/en/latest/
GNU General Public License v3.0
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Missing cgMLST QC data?
#92
mhkc
closed
10 months ago
0
Load samples to bonsai is very slow
#91
mhkc
closed
12 months ago
0
Find similar samples doesnt scale well
#90
mhkc
closed
12 months ago
0
User accounts do not have permission to add comment and classify QC
#89
mhkc
closed
10 months ago
0
WIP - Build and publish docker images on push/pull to master
#88
alkc
closed
6 months ago
1
/groups/edit: Make it easier to fill in the datatypes and JSON paths inputs
#87
alkc
closed
10 months ago
0
/groups/edit: Make update/delete buttons easier to access
#86
alkc
closed
10 months ago
0
11 document how to release and develop bonsai
#85
mhkc
closed
1 year ago
0
Create group with selected samples
#84
mhkc
closed
1 month ago
1
Add API route for searching for sample using sample ids
#83
mhkc
closed
1 year ago
12
added no groups text if there are no groups
#82
mhkc
closed
1 year ago
0
Groups with more than 500 samples crashes page
#81
mhkc
closed
1 year ago
0
Internal server error `requests.exceptions.HTTPError: 414 Client Error: Request-URI Too Long for url` when trying to cluster large quantity of samples from basket
#80
alkc
closed
1 year ago
2
Fix shifting table rows when applying search filters in /groups
#79
alkc
closed
1 year ago
0
added workaround for $getField
#78
mhkc
closed
1 year ago
0
Fixed signature permission error message
#77
mhkc
closed
1 year ago
0
Include SCRIPT_ROOT in URL creattion w JS
#76
mhkc
closed
1 year ago
1
unsupported operator in sample summary pipeline crashes both api and client
#75
alkc
closed
1 year ago
0
Sample table links unaware of subpath
#74
alkc
opened
1 year ago
2
56 sidebar in sample view is being obfuscated on small screens
#73
mhkc
closed
1 year ago
0
Add gunicorn to client depenencies for running in production
#72
alkc
closed
1 year ago
0
Graphic elemetns are too large on a small screen
#71
mhkc
closed
1 year ago
1
68 failed minhash clustering should not crash frontend
#70
mhkc
closed
1 year ago
0
Unset default limit of 20 samples when gathering metadata for grapetree data
#69
alkc
closed
1 year ago
0
Failed minhash clustering should not crash frontend
#68
mhkc
closed
1 year ago
0
48 client client permits creation of group with empty unique id and name
#67
mhkc
closed
1 year ago
0
64 bonsai cant load samples with multiple mlst alleles of the same loci
#66
mhkc
closed
1 year ago
3
Frontend server error when removing samples from basket
#65
alkc
closed
1 year ago
1
Bonsai cant load samples with multiple MLST alleles of the same loci
#64
mhkc
closed
1 year ago
0
cgvis version 2 beta 1 aka Bonsai
#63
mhkc
closed
1 year ago
0
Pinned Flask and werkzeug versions
#62
mhkc
closed
1 year ago
0
Pin versions of bonsai dependencies
#61
mhkc
closed
1 year ago
0
Added function to select samples that are similar to a given reference sample
#60
mhkc
closed
1 year ago
0
Function to select samples that are similar to a given reference sample
#59
mhkc
closed
1 year ago
0
24 sample basket cant hold more than 80 samples
#58
mhkc
closed
1 year ago
0
25 add qc status flags
#57
mhkc
closed
1 year ago
0
Sidebar in sample view is being obfuscated on small screens
#56
mhkc
closed
1 year ago
0
26 performance issues when displaying 1000+ samples
#55
mhkc
closed
1 year ago
1
Groups without a name can be created
#54
mhkc
closed
1 year ago
0
Update issue templates
#53
mhkc
closed
1 year ago
0
Bump werkzeug from 0.11.15 to 2.2.3
#52
dependabot[bot]
closed
1 year ago
1
Bump flask from 0.12 to 2.2.5
#51
dependabot[bot]
closed
1 year ago
1
Bump jinja2 from 2.8.1 to 2.11.3
#50
dependabot[bot]
closed
1 year ago
1
Bump babel from 2.3.4 to 2.9.1
#49
dependabot[bot]
closed
1 year ago
1
client: Client permits creation of group with empty unique id and name
#48
alkc
closed
1 year ago
0
client: Search results shift so that checkboxes become obscured when applying search filters in /groups
#47
alkc
closed
1 year ago
1
client: Bonsai pvl colour for positive needs to be green
#46
ryanjameskennedy
closed
1 year ago
2
client: no error communicated back to user when adding comment to sample fails
#45
alkc
closed
1 year ago
0
api: internal server error when deleting existing group
#44
alkc
closed
1 year ago
1
api: internal server error when adding samples to existing group
#43
alkc
closed
1 year ago
1
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