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Clinical-Genomics
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GeneLists
Scripts to automate the handling of gene lists
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Add a 'leave NA' switch
#39
ingkebil
closed
8 years ago
1
Main seperator should be `|`
#38
ingkebil
opened
8 years ago
0
NAXE does not find hit on E!
#37
ingkebil
closed
8 years ago
1
Click + uniprot + refseq
#36
ingkebil
closed
8 years ago
1
Change versioning level to gene list instead of customer
#35
ingkebil
closed
8 years ago
1
Fill in alias
#34
ingkebil
closed
8 years ago
1
EnsEMBL transcript querying might update gene symbol!
#33
ingkebil
closed
8 years ago
1
Handle genetic regions lacking HGNC_symbol and ENSGID
#32
henrikstranneheim
opened
8 years ago
0
First time clinical-master linking fails
#31
ingkebil
opened
8 years ago
0
Add UniProt
#30
ingkebil
closed
8 years ago
1
Query canonical transcript
#29
ingkebil
opened
9 years ago
0
Take gene description from OMIM
#28
ingkebil
opened
9 years ago
0
Create a reduced_penetrance flat file when creating clinical lists
#27
henrikstranneheim
opened
9 years ago
0
Guess the OMIM phenotypeMapList better
#26
ingkebil
closed
9 years ago
2
use official HGNC symbol when querying OMIM
#25
ingkebil
closed
9 years ago
1
Check Red_pen for more than 'Yes'
#24
ingkebil
closed
9 years ago
0
Make gene list invisible on cg.se
#23
ingkebil
opened
9 years ago
1
Meta data headers have wrong acronym
#22
ingkebil
closed
9 years ago
1
Transforming string for compatibility with vcf format
#21
henrikstranneheim
opened
9 years ago
3
Add contig tag to clinical master list
#20
henrikstranneheim
closed
9 years ago
3
Lookup table
#19
ingkebil
opened
9 years ago
1
Add Genetic_disease_model to master list
#18
ingkebil
closed
9 years ago
0
Header delimiter
#17
ingkebil
closed
9 years ago
2
OMIM inheritance rules
#16
ingkebil
closed
9 years ago
0
Cache OMIM updates
#15
ingkebil
closed
9 years ago
1
Exclude {} and ? inheritance models
#14
ingkebil
closed
9 years ago
0
Take CMMS annotation over OMIM annotation
#13
ingkebil
closed
9 years ago
1
Gene list page lists the wrong name for the FullList
#12
ingkebil
closed
9 years ago
2
Skip inheritance models without OMIM phenotype number and manual annotation
#11
ingkebil
closed
9 years ago
3
Add metadata header to masterlist
#10
ingkebil
closed
9 years ago
1
Always take official HGNC symbol
#9
ingkebil
closed
9 years ago
1
No match in EnsEMBL for any HGNC symbol should return the non-annotated result
#8
ingkebil
closed
8 years ago
1
Integrate manual annotated inheritance models of clinics
#7
ingkebil
closed
9 years ago
2
OMIM multiple entries
#6
ingkebil
closed
9 years ago
4
Add config file
#5
ingkebil
closed
8 years ago
0
import requests
#4
ingkebil
closed
10 years ago
1
Switch separator between databases
#3
robinandeer
closed
10 years ago
1
find_hg_version
#2
ingkebil
closed
9 years ago
1
Initial code review
#1
robinandeer
closed
10 years ago
6