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CoBrALab
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antsRegistration-MAGeT
A reimplementation of MAGeTbrain using only ANTs tools.
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Investigate implications of --float in ants
#55
gdevenyi
closed
6 years ago
0
Conceptual Question: Should smoothing sigmas be based on voxel space or real space?
#54
gdevenyi
closed
7 years ago
2
Removed minc-toolkit dependency from README
#53
pipitone
closed
8 years ago
1
Add dependency on pigz to README or switch to gzip/bzip
#52
pipitone
closed
7 years ago
3
Do some multi-spectral validation
#51
gdevenyi
opened
8 years ago
0
Voxel based memory time
#50
gdevenyi
closed
8 years ago
0
Replace bc with python and bash expressions
#49
pipitone
closed
8 years ago
2
"Error: Unrecognized interpolation option. genericlabel" in mb_resample.sh
#48
pipitone
closed
8 years ago
8
Fix quoting on bc maths
#47
pipitone
closed
8 years ago
0
Error estimating memory requirements on very low resolution inputs
#46
pipitone
closed
8 years ago
10
Audit local vs global bash variables
#45
gdevenyi
closed
7 years ago
1
bc: command not found
#44
jakeopolis
closed
8 years ago
2
Check that (#labels)%(#altases) == 0
#43
gdevenyi
closed
7 years ago
1
Surface Area Stuff
#42
gdevenyi
opened
8 years ago
0
Memory time estimates
#41
gdevenyi
closed
8 years ago
0
Switch to using bash's extglob syntax
#40
gdevenyi
closed
6 years ago
3
Switch to using bash arrays
#39
gdevenyi
closed
6 years ago
1
Fix cross validations scripts to use new mb.sh options
#38
gdevenyi
closed
8 years ago
0
Purge qbatch submodule
#37
gdevenyi
closed
8 years ago
0
Document non-standard run modes
#36
gdevenyi
closed
8 years ago
1
Allow control of datetime prefix?
#35
gdevenyi
closed
7 years ago
1
Jobstatus option?
#34
gdevenyi
closed
7 years ago
1
mb_resample implementation
#33
gdevenyi
closed
8 years ago
0
Brainstorm/implement command-line parameters
#32
gdevenyi
opened
8 years ago
3
Move status exit check to earlier in mb.sh
#31
gdevenyi
closed
8 years ago
0
label resample stage dependency broken
#30
steelec
closed
8 years ago
1
Use loocv to validate ROI based registration
#29
gdevenyi
opened
8 years ago
0
Test aggressiveness of SyN gradientstep
#28
gdevenyi
closed
6 years ago
1
Increase strictness of bash scripts
#27
gdevenyi
closed
8 years ago
0
Can we "compute" walltime estimates based on the size of the job?
#26
gdevenyi
closed
8 years ago
1
Can we "compute"
#25
gdevenyi
closed
8 years ago
0
What to do about mb_vote stage?
#24
gdevenyi
closed
8 years ago
1
Generic QC images?
#23
gdevenyi
closed
8 years ago
4
Fix issues with really large label filesize
#22
gdevenyi
closed
8 years ago
4
Split out commands from main script
#21
gdevenyi
closed
8 years ago
0
Document some actual runtimes
#20
gdevenyi
closed
8 years ago
2
Ants resolution check implemented
#19
gdevenyi
closed
8 years ago
0
Implement other validation methods
#18
gdevenyi
opened
8 years ago
7
Implement multi-modal registration in mb_register.sh
#17
gdevenyi
closed
8 years ago
1
Use new qbatch's STDIN functionality to further improve many-tiny-files IO on scinet.
#16
gdevenyi
closed
8 years ago
1
Implement "run only stage X" options.
#15
gdevenyi
closed
8 years ago
1
Parallelize loops using gnu-parallel to speed up file checking
#14
gdevenyi
closed
8 years ago
3
Ensure agnostic input/output filetypes.
#13
gdevenyi
closed
7 years ago
2
Fix up label file appending to final outputs
#12
gdevenyi
closed
7 years ago
2
Improve directory structure to fix IO on scinet
#11
gdevenyi
closed
8 years ago
1
Steal ANTs' "high resolution" check
#10
gdevenyi
closed
8 years ago
2
Fix excessive use of basename
#9
gdevenyi
closed
8 years ago
1
Change to MINC format, consolidate registration commands
#8
gdevenyi
closed
8 years ago
0
Compare ImageMath majority_vote to voxel_vote from minc-stuffs
#7
gdevenyi
closed
8 years ago
3
antsRegistration multi-mask mode currently broken
#6
gdevenyi
closed
8 years ago
3
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