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CoBrALab
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antsRegistration-MAGeT
A reimplementation of MAGeTbrain using only ANTs tools.
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BIDS based input concepts
#105
gdevenyi
opened
1 year ago
0
Complete rewrite
#104
gdevenyi
opened
1 year ago
0
Investigate implementing shaped-based averaging
#103
gdevenyi
opened
3 years ago
0
qbatch error
#102
neer86upadhyay
closed
3 years ago
2
Add metadata pre-read to SimpleITK scripts
#101
gdevenyi
opened
4 years ago
0
Running MAGeT locally (NVIDIA card)
#100
yuniorcf
closed
5 years ago
1
Warn if multiple labels are supplied with labelmasking
#99
gdevenyi
opened
5 years ago
0
Check for improperly named label files
#98
gdevenyi
opened
5 years ago
1
Enable labelmasking in template to subject registrations, slows down staging
#97
gdevenyi
closed
6 years ago
0
Python issue on systems with 2 and 3
#96
cfhammill
closed
6 years ago
1
Huge number of job submissions
#95
cfhammill
closed
6 years ago
9
Add --fast option
#94
gdevenyi
closed
6 years ago
1
Generate resolution dependent iterations
#93
gdevenyi
closed
6 years ago
0
Limit the number of total jobs on Niagara
#92
gdevenyi
closed
6 years ago
1
Move to generating jobfiles rather than using pipe
#91
gdevenyi
closed
6 years ago
1
output directory not created
#90
steelec
closed
6 years ago
2
typo correction and addition of -l option text
#89
steelec
closed
7 years ago
0
Fix stage naming to be consistent of underscore vs hypen
#88
gdevenyi
closed
6 years ago
0
stage_estimate should skip template-subject estimate
#87
gdevenyi
opened
7 years ago
1
Provide both absolute and relative jacobians
#86
gdevenyi
closed
6 years ago
1
Fix QC images
#85
gdevenyi
opened
7 years ago
2
mb_resample 0.5 hour per label per subject at 2 parallel jobs
#84
gdevenyi
opened
7 years ago
0
Fix variable names in stage_multiatlas_vote of stages.sh
#83
cbedetti
closed
7 years ago
5
Job dependencies with multiatlas
#82
cbedetti
closed
6 years ago
3
Move location of joblogs and qbatch scripts into output/
#81
gdevenyi
closed
6 years ago
1
Add command-line logging
#80
gdevenyi
closed
6 years ago
1
Break registration into two-part affine/non-linear
#79
gdevenyi
closed
7 years ago
1
Check for proper atlas/label pairs before run
#78
gdevenyi
opened
7 years ago
0
containerized version
#77
gdevenyi
closed
7 years ago
2
Move status output to a stage
#76
gdevenyi
closed
6 years ago
1
Limit number of total jobs on SciNet
#75
gdevenyi
closed
6 years ago
2
Implement travis or circleci
#74
gdevenyi
opened
7 years ago
0
mutiatlas labels
#73
johndlewis
closed
7 years ago
3
Investigate laplacian generation for fitting
#72
gdevenyi
closed
7 years ago
1
Pre-compute blur files?
#71
gdevenyi
closed
7 years ago
1
mb_resample.sh
#70
dcoynel
closed
7 years ago
1
job name
#69
dcoynel
closed
7 years ago
1
Update bash helper header
#68
gdevenyi
closed
7 years ago
1
Check and issue warning of input files are newer than outputs
#67
gdevenyi
opened
7 years ago
0
Auto-generate QC with ANTs tools?
#66
gdevenyi
closed
7 years ago
6
Breakup memory and time estimate
#65
gdevenyi
closed
7 years ago
1
Write "--fast" option
#64
gdevenyi
closed
7 years ago
1
Add option to specify the "primary" MRI contrast
#63
gdevenyi
opened
7 years ago
0
Test atlas flipping
#62
gdevenyi
closed
6 years ago
1
Generate mask based on joint of all labels?
#61
gdevenyi
closed
6 years ago
1
Test impact of hyperthreading on single antsRegistration run
#60
gdevenyi
closed
8 years ago
0
Compare ANTs's "quick" mode to "normal" mode
#59
gdevenyi
opened
8 years ago
1
Make generic cluster support honour QBATCH variables
#58
gdevenyi
closed
8 years ago
1
Use new --pbs-node-spec to allow for 64gb scinet node jobs
#57
gdevenyi
closed
8 years ago
0
Investigate/Document how to cheat with scinet backfill
#56
gdevenyi
closed
8 years ago
3
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