CoBrALab twolevel_ants_dbm issues

CoBrALab / twolevel_ants_dbm

A twolevel deformation based morphometry pipeline using ants

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issues

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Implement --shape-update-method

#62 gdevenyi opened 2 months ago
0
updated script

#61 zswgzx opened 3 years ago
0
fyi

#60 zswgzx closed 3 years ago
4
refactor

#59 zswgzx opened 3 years ago
9
ANTs Subprocess Error

#58 shlrley closed 3 years ago
3
Generation of overall DBM outputs from first level subjects is done out-of-order

#57 gdevenyi closed 3 years ago
1
twolevel_dbm.py and 1level

#56 weimath closed 3 years ago
12
Add in generation of overall jacobians per-scan

#55 gdevenyi closed 4 years ago
1
Question about ANTSUseDeformationFieldToGetAffineTransform

#54 estellenassar closed 4 years ago
2
Implement volgenmodel mode

#53 gdevenyi opened 4 years ago
0
BIDS input?

#52 gdevenyi opened 4 years ago
0
delin and affine jacobians are incorrectly computed

#51 gdevenyi closed 4 years ago
1
Redesign of parallelism and checkpointing

#50 gdevenyi opened 4 years ago
0
Rewapping

#49 gdevenyi closed 4 years ago
0
Improve logging

#48 gdevenyi closed 4 years ago
0
Add verbose mode, equivalent to dry-run but also run the command

#47 gdevenyi closed 4 years ago
0
Fix dryrun

#46 gdevenyi closed 4 years ago
0
Improve run_command

#45 gdevenyi opened 4 years ago
0
Break commands into finer steps

#44 gdevenyi closed 4 years ago
1
Mixed-level modelbuilds

#43 gdevenyi closed 4 years ago
1
Add checks and warnings for misconfigured csvs

#42 gdevenyi closed 4 years ago
0
Switch all string formatting to f-strings

#41 gdevenyi closed 4 years ago
0
Audit dryrun to confirm it does nothing

#40 gdevenyi closed 4 years ago
1
ANTSUseDeformationFieldToGetAffineTransform Error

#39 npgretz closed 4 years ago
21
Allow user specified masks

#38 gdevenyi opened 4 years ago
0
Switch to default blur of FWHM=2x min res

#37 gdevenyi closed 4 years ago
0
Propagate modelbuild settings to common space registration.

#36 gdevenyi opened 4 years ago
1
Add skip DBM option

#35 gdevenyi closed 4 years ago
0
Add some more detail on which stage is being run and avoid rerunning more complete stages

#34 gdevenyi closed 4 years ago
0
Revert "Add exception handling for run_command"

#33 gdevenyi closed 4 years ago
0
Switch ProcessPool to ThreadPool

#32 gdevenyi closed 4 years ago
0
Add exception handling for run_command

#31 gdevenyi closed 4 years ago
0
implement --registration_to_common_space

#30 FrancoisPgm closed 4 years ago
2
Implement cleanup

#29 gdevenyi opened 5 years ago
0
Parsing of jacobian list is broken if it is last in the command line

#28 gdevenyi closed 4 years ago
1
Make sure all string formatting is fstrings

#27 gdevenyi closed 4 years ago
0
Switch to parallelism using concurrent.futures

#26 gdevenyi closed 4 years ago
1
Throw warning if 1level is specified and there exist multiple columns in input.csv

#25 gdevenyi closed 4 years ago
1
Switch from processpool to threadpool

#24 gdevenyi closed 5 years ago
1
Add --minc conversion

#23 gdevenyi opened 5 years ago
1
Switch smoothing to FWHM=2x resolution

#22 gdevenyi closed 4 years ago
1
Implement mutli-stage modelbuild

#21 gdevenyi opened 5 years ago
1
Improve padding around input filenames

#20 gdevenyi closed 4 years ago
1
Implement "subsample" based modelbuild

#19 gdevenyi opened 5 years ago
0
Implement masked smoothing

#18 gdevenyi opened 5 years ago
0
Implement resample to common space

#17 gdevenyi closed 4 years ago
3
Add configuration for log vs non-log jacobian

#16 gdevenyi opened 5 years ago
0
Add configuration for finite vs geometric jacobain

#15 gdevenyi opened 5 years ago
0
allow custom subject IDs

#14 steelec opened 5 years ago
0
Check for duplicate names

#13 gdevenyi opened 5 years ago
0