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Computational-Morphogenomics-Group
/
MarkerMap
Marker selection, supervised and unsupervised
MIT License
5
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allow returning saved models, fix quick_starts
#57
WilsonGregory
closed
4 weeks ago
0
Slurm runtime error due to deprecated slurm syntax
#56
linderss
opened
4 weeks ago
1
Gregory sparse array
#55
WilsonGregory
closed
5 months ago
0
Error sparse array length is ambiguous; use getnnz() or shape[0]
#54
Rafael-Silva-Oliveira
closed
5 months ago
1
Document that we need dense arrays
#53
WilsonGregory
closed
5 months ago
1
update quick start scripts and notebooks, readme
#52
WilsonGregory
closed
8 months ago
0
separate smashpy into a separate file, update build files, update pl to >= 2.0
#51
WilsonGregory
closed
8 months ago
0
updates
#50
WilsonGregory
closed
1 year ago
0
bug fixes
#49
WilsonGregory
closed
1 year ago
0
fix mouse brain counts
#48
WilsonGregory
closed
1 year ago
0
Gregory persist2
#47
WilsonGregory
closed
1 year ago
0
make benchmark work for reconstruction as well
#46
WilsonGregory
closed
1 year ago
0
add zeisel and mouse_brain lots of cell types
#45
WilsonGregory
closed
1 year ago
0
add benchmark models for various differential expression methods
#44
WilsonGregory
closed
1 year ago
0
update readme installation instructions to use pip, add a section abo…
#43
WilsonGregory
closed
2 years ago
1
fix demo simple interface, issues with imports, bump to 1.0.2
#42
WilsonGregory
closed
2 years ago
1
force smashpy to be 0.1.2, there is an issue with older one
#41
WilsonGregory
closed
2 years ago
0
Gregory package
#40
WilsonGregory
closed
2 years ago
0
move RankCorr folder, update setup.cfg, bump version to 1
#39
WilsonGregory
closed
2 years ago
0
Major refactor
#38
WilsonGregory
closed
2 years ago
2
fix plot_umap_embedding since old version visualize_save_embedding no longer exists
#37
WilsonGregory
closed
2 years ago
0
allow the mislabel experiment to only have the mislabelling on markers
#36
WilsonGregory
closed
2 years ago
1
Gregory fix eval recon
#35
WilsonGregory
closed
2 years ago
0
Gregory umap
#34
WilsonGregory
closed
2 years ago
0
L2 Not Good for scVI vs MarkerMap
#33
WilsonGregory
closed
2 years ago
1
Evaluate Reconstruction
#32
WilsonGregory
opened
2 years ago
0
Gregory evaluate recon
#31
WilsonGregory
closed
2 years ago
1
move data load functions to utils
#30
WilsonGregory
closed
2 years ago
1
fix param on supervised mm, add script to help me later print the results
#29
WilsonGregory
closed
2 years ago
0
allow passing in args when you submit the script
#28
WilsonGregory
closed
2 years ago
1
add RankCorr, update notebooks to use RankCorrWrapper for easier importing
#27
WilsonGregory
closed
2 years ago
1
add the ability to specify the decoders
#26
WilsonGregory
closed
2 years ago
6
add benchmark quick start, update readme and add table of contents
#25
WilsonGregory
closed
2 years ago
2
fix name
#24
WilsonGregory
closed
2 years ago
1
Quick Start Script and Readme
#23
WilsonGregory
closed
2 years ago
0
save f1 benchmark as well, allow plotting of f1 in plot benchmarks
#22
WilsonGregory
closed
2 years ago
0
Package MarkerMap for local installation
#21
WilsonGregory
closed
2 years ago
2
disable checkpointing in train_model
#20
WilsonGregory
closed
2 years ago
0
add mouse brain preprocessing to benchmark script
#19
WilsonGregory
closed
2 years ago
0
Project Lacks a License
#18
beelze-b
closed
2 years ago
4
benchmark noise
#17
WilsonGregory
closed
2 years ago
1
use smashpy wrapper instead of smashpy
#16
WilsonGregory
closed
2 years ago
0
add functions to select between different data sets
#15
WilsonGregory
closed
2 years ago
0
benchmark save
#14
WilsonGregory
closed
2 years ago
0
benchmark smashpy, L1_VAE
#13
WilsonGregory
closed
2 years ago
3
Benchmark Wrappers
#12
WilsonGregory
closed
2 years ago
8
benchmarking framework
#11
WilsonGregory
closed
2 years ago
3
clean remainder of notebooks
#10
WilsonGregory
closed
2 years ago
0
Optimize sample_subset with Pytorch JIT
#9
WilsonGregory
opened
2 years ago
0
Pre-commit Hook
#8
WilsonGregory
opened
2 years ago
0
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