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DCAN-Labs
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BIBSnet
This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.
https://bibsnet.readthedocs.io/en/latest/
Apache License 2.0
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Turn off post-processing settings for cases where manual segmentation correction has been performed
#92
erikglee
closed
11 months ago
2
T2mat
#91
tikal004
closed
1 year ago
0
Remove unused files from data.tar.gz
#90
LuciMoore
closed
3 months ago
1
Rename S3 data archive to s3://bibsnet-data
#89
tikal004
closed
3 months ago
1
adding remove_extra_clusters_from_mask
#88
tikal004
closed
1 year ago
0
Issue running prebibsnet and bibsnet stages, then later running postbibsnet
#87
erikglee
closed
3 months ago
1
Remove executable permission from text files which have no shebang
#86
yarikoptic
opened
1 year ago
0
Error downloading FSL in Docker build
#85
tikal004
closed
3 months ago
3
BIBSnet
#83
tikal004
closed
1 year ago
0
Add codespell config and workflow to catch when/if typo is introduced
#82
yarikoptic
opened
1 year ago
0
Remove executable permission from text files which have no shebangs
#81
yarikoptic
closed
1 year ago
1
Shrink docker build
#80
madisoth
closed
1 year ago
0
postBIBSnet chirality correction not accurate around midline
#84
moser297
closed
2 months ago
4
updated chmod 666 line
#79
rosemccollum
closed
1 year ago
0
added remove extra clusters function
#78
madisoth
closed
1 year ago
0
Is the T2-only Model flag up and running?
#77
henrycikanek
closed
3 months ago
4
updated readme
#76
rosemccollum
closed
1 year ago
0
Generated only one half of the aseg file
#75
yanbin-niu
closed
1 year ago
4
adding info about t1/2 only models
#74
rosemccollum
closed
1 year ago
0
incorporate Model 552
#73
rosemccollum
closed
1 year ago
0
added question template and link to readthedocs
#72
audreymhoughton
closed
1 year ago
0
Question link is wrong
#71
rosemccollum
closed
1 year ago
0
Incorporate Model 552
#70
audreymhoughton
closed
1 year ago
0
Update bug_report.yml
#69
lundq163
closed
1 year ago
0
Document T1-only / T2-only
#68
audreymhoughton
closed
1 year ago
0
fix 0 mo age input error
#67
rosemccollum
closed
1 year ago
0
Run Nibabies + XCP-D
#66
audreymhoughton
closed
1 year ago
1
Error when running model 515 - T2w-only
#65
audreymhoughton
closed
1 year ago
9
fix 0 mo age input
#64
rosemccollum
closed
1 year ago
0
added sidecar json info
#63
tikal004
closed
1 year ago
0
Derivative jsons
#62
tikal004
closed
1 year ago
0
updated rtd to exclude CPU usability in usage.md
#61
lundq163
closed
1 year ago
0
Update doc link to latest instead of stable
#60
rosemccollum
closed
1 year ago
0
Issues with Segmentation File
#59
henrycikanek
closed
1 year ago
3
Dataset_description.json error
#58
ajdneuro
closed
1 year ago
4
Exactly one BIBSnet seg file
#57
ajdneuro
closed
1 year ago
3
Merge pull request #55 from DCAN-Labs/main
#56
audreymhoughton
closed
1 year ago
0
DOI Update
#55
audreymhoughton
closed
1 year ago
0
CABINET is having an issue converting 6 month aged subjects to int
#54
henrycikanek
closed
1 year ago
4
Update README.md
#53
audreymhoughton
closed
1 year ago
0
updated outputs
#52
rosemccollum
closed
1 year ago
0
Segmentations and Masks Output in T1-native and T2-native Space
#51
audreymhoughton
closed
1 year ago
0
T2 images rotated during T2 to T1 alignment in preBIBSNet
#50
moser297
opened
1 year ago
3
closing issue #39
#49
rosemccollum
closed
1 year ago
0
Make aseg-derived mask only once
#48
LuciMoore
opened
1 year ago
0
Issues with Segmentation and Surfaces Generated from BIBSNET
#47
henrycikanek
closed
1 year ago
5
Minor bug when running BIBSNet without overwrite flag when there are partial existing intermediate outputs in tmp space
#46
LuciMoore
closed
2 months ago
1
Output a separate segmentation in native T2w space (in addition to current output in T1w space)
#45
LuciMoore
closed
1 year ago
1
Test possible bugs with --overwrite flag & possibly default to clearing old outputs until this is resolved
#44
LuciMoore
opened
1 year ago
3
Read only file system error
#43
ajdneuro
closed
1 year ago
9
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