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DiamondLightSource
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PySIMRecon
Easy to use wrapper for pyCUDAsirecon, allowing the use of DV files without PRIISM
GNU General Public License v3.0
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Improve log files
#40
thomasmfish
closed
2 months ago
0
Enable `sim-recon` and `sim-otf` without a config
#39
thomasmfish
closed
2 months ago
0
`image_resolution_from_mrc`: create and use it in `get_image_data` & `write_dv`
#38
thomasmfish
closed
2 months ago
0
`dv_to_tiff`: correct pixel size argument in call to `write_tiff`
#37
thomasmfish
closed
2 months ago
0
`_prepare_files`: simplify by removing single channel condition
#36
thomasmfish
closed
2 months ago
0
Allow-non-square-pixel-sizes
#35
thomasmfish
closed
2 months ago
0
`get_wavelengths_from_dv`: handle `dv.extFloats` that are `np.recarray`s
#34
thomasmfish
closed
2 months ago
0
Include-defaults-in-recon-config
#33
thomasmfish
closed
2 months ago
0
Typing-improvements
#32
thomasmfish
closed
2 months ago
1
`_prepare_files`: use correct wavelength attribute as channel key
#31
thomasmfish
closed
2 months ago
0
simplify parsing (only parse once)
#30
thomasmfish
closed
2 months ago
0
trigger_docs_generation.yaml: `generate-README` try `always() && !cancelled()`
#29
thomasmfish
closed
2 months ago
0
Link pycudasirecon and cudasirecon in README
#28
thomasmfish
closed
2 months ago
0
Use pre-commits
#27
thomasmfish
closed
2 months ago
0
Add installation section to docs
#26
thomasmfish
closed
2 months ago
0
Installing from scratch.
#25
iandobbie
closed
2 months ago
8
`parse_recon_args`: allow `--output-directory` to be `None` by default
#24
thomasmfish
closed
2 months ago
0
Generate README with GH Actions
#23
thomasmfish
closed
2 months ago
1
Add matplotlib as dependency (for otf-view)
#22
thomasmfish
closed
2 months ago
0
Generate README with GH Actions
#21
thomasmfish
closed
2 months ago
1
recon.py: fix `ProcessingInfo` import
#20
thomasmfish
closed
2 months ago
0
Access and use the defaults properly from the the function signature `Parameter`s
#19
thomasmfish
closed
2 months ago
0
Specify channel name (`emission_nm_int`) as well as channel wavelengths to more clearly link to configs
#18
thomasmfish
closed
2 months ago
0
Improve documentation
#17
thomasmfish
closed
2 months ago
2
Make methods more consistent
#16
thomasmfish
closed
2 months ago
1
Refactor files/images.py into separate images/*.py files
#15
thomasmfish
closed
2 months ago
2
`write_tiff`: add `overwrite` argument
#14
thomasmfish
closed
2 months ago
0
State some of the key files that are being used in the reconstructions
#13
thomasmfish
closed
2 months ago
0
Determine shape from DV header and use that to ensure correct indexing
#12
thomasmfish
closed
2 months ago
0
add '--shape' argument to OTF parser rather than hard-coded `(256, 256)`
#11
thomasmfish
closed
2 months ago
4
Fix channel handling in `get_image_data`
#10
thomasmfish
closed
2 months ago
0
Small changes
#9
thomasmfish
closed
2 months ago
0
Simplify configs in repo
#8
thomasmfish
closed
3 months ago
0
Create log file for OTF creation
#7
thomasmfish
closed
3 months ago
0
DV extended metadata
#6
thomasmfish
opened
3 months ago
1
High-frequency filtering is harsher than from softworx
#5
thomasmfish
opened
3 months ago
0
Rethink temporary file handling
#4
thomasmfish
closed
3 weeks ago
0
Include both wavelengths in metadata
#3
thomasmfish
closed
3 months ago
0
Change `WavelengthSettings` to be `ChannelConfig` for clarity
#2
thomasmfish
closed
3 months ago
0
`run_reconstructions`: add path and wavelength to message in `error_callback`
#1
thomasmfish
closed
3 months ago
0
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