issues
search
EBI-Metagenomics
/
notebooks
MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)
https://ebi-metagenomics.github.io/notebooks
Apache License 2.0
14
stars
10
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
MGnify Proteins docs - restructure navigation
#54
mberacochea
closed
1 month ago
0
codarfe bug fix
#53
MuriloCaminotto
opened
3 months ago
0
adds instructions for running docker image on apple-silicon + colima
#52
SandyRogers
opened
3 months ago
0
codarfe notebook and libs
#51
MuriloCaminotto
opened
3 months ago
0
Adding mia examples
#50
SHillman836
opened
4 months ago
6
added mgnifyR workflow that uses mia
#49
Insaynoah
closed
3 months ago
7
Update r-environment.yml
#48
aplapteva
opened
7 months ago
1
Fix/update atlanteco
#47
KateSakharova
closed
7 months ago
0
Fix/update atlanteco
#46
SandyRogers
closed
7 months ago
0
Multiomics docu
#45
Ales-ibt
closed
8 months ago
1
Update genome-viewer.md
#44
tgurbich
closed
9 months ago
0
Small bug fixed on Pathways Vis notebook
#43
Ales-ibt
closed
9 months ago
0
Update MGnifyR repo
#42
SandyRogers
closed
1 year ago
0
Adds documentation page about "additional analyses" (RO-Crates)
#41
SandyRogers
closed
1 year ago
0
Updated submission link to reflect redirection of submit page, to the…
#40
MGS-sails
closed
1 year ago
0
Comparative practice 2023
#39
Ales-ibt
closed
1 year ago
0
Push built containers to registry
#38
SandyRogers
closed
1 year ago
0
docs: add KateSakharova as a contributor for ideas, code, and content
#37
allcontributors[bot]
closed
1 year ago
0
New contributor
#36
SandyRogers
closed
1 year ago
2
AtlantECO notebook
#35
KateSakharova
closed
1 year ago
0
Dime project
#34
SandyRogers
closed
1 year ago
3
Multi stage build
#33
SandyRogers
closed
1 year ago
0
docs: add amartyanambiar as a contributor for code, example, and ideas
#32
allcontributors[bot]
closed
1 year ago
0
docs: add tgurbich as a contributor for ideas, code, and content
#31
allcontributors[bot]
closed
1 year ago
0
Add contributor
#30
SandyRogers
closed
1 year ago
2
Corrected typos
#29
tgurbich
closed
1 year ago
0
GSC workshop notebook
#28
tgurbich
closed
1 year ago
1
GSC: broken linkout URL on https://docs.mgnify.org/src/docs/about.html
#27
Woolly-at-EBI
opened
1 year ago
0
Pathways vis
#26
Ales-ibt
closed
1 year ago
3
Problem with Mgnify Sequence Search
#25
exsto1
closed
1 year ago
1
Tests for environment variable insertion (notebooks) occasionally fails
#24
SandyRogers
opened
1 year ago
0
Separating python and r kernels into their own conda envs
#23
SandyRogers
closed
1 year ago
0
Adds static documentation (docs.mgnify.org)
#22
SandyRogers
closed
1 year ago
0
add maps notebook and required dataset parquets
#21
vestalisvirginis
opened
1 year ago
0
Siamcat2 interpretation plot
#20
Ales-ibt
closed
1 year ago
0
Static (preview) rendering
#19
SandyRogers
closed
1 year ago
0
docs: add mberacochea as a contributor for ideas, code, and 2 more
#18
allcontributors[bot]
closed
2 years ago
0
docs: add vestalisvirginis as a contributor for ideas, code, and content
#17
allcontributors[bot]
closed
2 years ago
0
docs: add bgruening as a contributor for infra
#16
allcontributors[bot]
closed
2 years ago
1
docs: add bebatut as a contributor for infra
#15
allcontributors[bot]
closed
2 years ago
0
BioHackEU22 Contributors
#14
SandyRogers
closed
2 years ago
6
Biohackaton2022 ESM Altas integration
#13
mberacochea
closed
1 year ago
0
Adds jupyter-lab extension with MGnify help
#12
SandyRogers
closed
2 years ago
0
Biohackaton2022 genomes nb
#11
vestalisvirginis
closed
1 year ago
0
docs: add SandyRogers as a contributor for code, example, and 3 more
#10
allcontributors[bot]
closed
2 years ago
0
docs: add Ales-ibt as a contributor for code, example, and ideas
#9
allcontributors[bot]
closed
2 years ago
0
Comparative metagenomics notebook after Sandy Rogers feedback
#8
Ales-ibt
closed
2 years ago
4
Docker image cannot be built on Apple Mac M1/M2
#7
SandyRogers
opened
2 years ago
0
Comparative metagenomics siamcat
#6
Ales-ibt
closed
2 years ago
2
Comparative metagenomics
#5
Ales-ibt
closed
2 years ago
0
Next