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EddyRivasLab
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hmmer
HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
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translation glitch in 3.1b2 bundled esl-stranslate
#133
alicedb2
closed
6 years ago
2
hmmbuild miscounts transitions in final node, because of fragment marking
#132
cryptogenomicon
closed
6 years ago
2
"hmmsearch -A" segfaults if top-ranked seq has no reported domains
#131
cryptogenomicon
closed
6 years ago
1
HMMER Web Service Range Parameter Total Row Count
#130
ayedo
closed
7 years ago
1
Jackhmmer uncheck all
#129
potter-s
closed
7 years ago
1
FM code updates
#128
traviswheeler
closed
7 years ago
1
Jackhmmer uncheck all
#127
potter-s
closed
7 years ago
2
added missing #if
#126
potter-s
closed
7 years ago
1
changed type of variable n in hmmc2.c/main to uint64_t
#125
npcarter
closed
7 years ago
0
Test 255 [rewind] fails in clean checkout of h3-develop
#124
npcarter
closed
7 years ago
3
hmmc crash because 32-bit int used for size of data object
#123
npcarter
closed
6 years ago
5
H4 Daemon uses hack to detect type of data file
#122
npcarter
opened
7 years ago
0
HMMER can't read data files that were written on a machine of opposite endianness
#121
npcarter
opened
7 years ago
0
HMMER4 doesn't handle POWER architecture when booted in big-endian mode
#120
npcarter
opened
7 years ago
4
H4 needs Altivec versions of forward and backward filters
#119
npcarter
closed
4 years ago
1
nhmmer corrupted by * residues in input seqs
#118
traviswheeler
closed
7 years ago
0
hmmsim only worked for Amino Acid models
#117
traviswheeler
closed
7 years ago
1
H3 fails to read old H2 save file
#116
traviswheeler
closed
7 years ago
1
Make clean/distclean fail within binary distributions
#115
traviswheeler
closed
7 years ago
0
Compile error on OpenBSD, netinet/in.h.
#114
traviswheeler
closed
7 years ago
0
Funny characters printed in E-value for hits with score >1000
#113
traviswheeler
closed
7 years ago
0
Marginal hits late in target might be filtered in an nhmmer search
#112
traviswheeler
closed
7 years ago
0
hmmsearch segfaults if a DNA HMM is searched against a protein db
#111
traviswheeler
closed
7 years ago
0
hmmalign segfaults on zero length input sequences.
#110
traviswheeler
closed
7 years ago
0
In hmmbuild, --laplace flag was ignored.
#109
traviswheeler
closed
7 years ago
0
Error printing very small E-values
#108
traviswheeler
closed
7 years ago
0
Bias filter inactive in phmmer
#107
traviswheeler
closed
7 years ago
0
Worker threads on OS X experienced denormal slow-down
#106
traviswheeler
closed
7 years ago
0
hmmbuild fails with "Top is not empty" on bad Stockholm MSA
#105
traviswheeler
closed
7 years ago
0
phmmer assigns incorrect scores to degenerate residues
#104
traviswheeler
closed
7 years ago
0
Running out of disk space corrupts outputs
#103
traviswheeler
closed
7 years ago
0
jackhmmer fails: backconverted subseq didn't end at expected length
#102
traviswheeler
closed
7 years ago
0
hmmscan floating point exception, is actually database corruption
#101
traviswheeler
closed
7 years ago
0
phmmer's displayed consensus differs from query sequence
#100
traviswheeler
closed
7 years ago
0
HMMER_NCPU env var sets --cpu, creates incompatibility with -n, --mpi
#99
traviswheeler
closed
7 years ago
0
Many classic score matrices are invalid for phmmer/jackhmmer
#98
traviswheeler
closed
7 years ago
0
Fragment definition (--fragthresh) incorrectly documented.
#97
traviswheeler
closed
7 years ago
0
man pages have stray @KEYWORDS@ and aren't installed by "make install"
#96
traviswheeler
closed
7 years ago
0
hmmscan and hmmsearch give different results for same model
#95
traviswheeler
closed
7 years ago
0
hmmbuild: "composition fails pvector validation"
#94
traviswheeler
closed
7 years ago
0
commandline E-value threshold options only work down to ~1e-30
#93
traviswheeler
closed
7 years ago
0
hmmbuild corrupts resave alignment on all-insert seq
#92
traviswheeler
closed
7 years ago
0
dombias output was in nats, not bits
#91
traviswheeler
closed
7 years ago
0
hmmconvert can't read H2 "Nucleic" save files
#90
traviswheeler
closed
7 years ago
0
Memory corruption in resized generic P7_GMX
#89
traviswheeler
closed
7 years ago
0
phmmer --acc segfaults when no accession is available
#88
traviswheeler
closed
7 years ago
0
hmmalign corrupts column before an all-deleted column
#87
traviswheeler
closed
7 years ago
0
esl_tmpfile*() string must be modifiable; char tmpfile[] = "tmpXXXXXX" insufficient
#86
traviswheeler
closed
7 years ago
0
HMMER_NCPU environment variable has no effect
#85
traviswheeler
closed
7 years ago
0
Different envelopes, identical alignment
#84
traviswheeler
closed
7 years ago
0
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