issues
search
FOI-Bioinformatics
/
nanometa_live
A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.
GNU General Public License v3.0
14
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
usage with multiple barcodes
#69
Laura-ciuf
opened
2 months ago
1
Enhance Accessibility of Nanometa GUI by Enabling External Network Access
#68
druvus
closed
7 months ago
0
Added blast cutoffs to GUI.
#67
KristofferSandas
closed
7 months ago
0
Enabled editing of headline in GUI.
#66
KristofferSandas
closed
7 months ago
1
Added danger color threshold to GUI.
#65
KristofferSandas
closed
7 months ago
0
Missing biocontainer for laterst version (0.3.1)
#64
druvus
closed
7 months ago
0
Refactoring External Database Options and Setup Script Modifications
#63
druvus
closed
9 months ago
0
Enhanced Time String Parsing and Sorting in QC DataFrame
#62
druvus
closed
9 months ago
0
Enhancements and Bug Fixes in nanometa_live
#61
druvus
closed
9 months ago
0
Update Project Configuration and Utility Functions
#60
druvus
closed
9 months ago
0
Top aligned main tab sections
#59
KristofferSandas
closed
10 months ago
0
Added buttons for saving kreport + lists
#58
KristofferSandas
closed
10 months ago
0
Refactor Config Loading and Update Tooltip Text in nanometa_gui.py
#57
druvus
closed
10 months ago
0
Make Project Path Argument Required in `nanometa_new.py`
#56
druvus
closed
10 months ago
0
Enhanced Command-line Arguments and Config Update in `nanometa_new.py`
#55
druvus
closed
10 months ago
0
Enhanced Logging and New Features
#54
druvus
closed
10 months ago
0
Enhance Data Preparation Workflow by Adding Genome Files Existence Check
#53
druvus
closed
11 months ago
0
bump version to 0.3.1
#52
druvus
closed
11 months ago
0
Enhancements to `file_utils.py` and `transform_utils.py` to implement mode gtdb-file
#51
druvus
closed
11 months ago
0
Extend Functionality to Handle Local Files Based on Tax IDs
#50
druvus
closed
11 months ago
0
Enhancements in nanometa-prepare for Improved Usability and Flexibility
#49
druvus
closed
11 months ago
0
Automatically Create BLAST Database Folders and Refactor Main Script
#48
druvus
closed
11 months ago
0
Refactor BLAST Database Building and Checking
#47
druvus
closed
11 months ago
0
Optimize timed_senser to Accept Pre-loaded Config
#46
druvus
closed
11 months ago
0
Define version globally
#45
druvus
closed
11 months ago
0
Renaming live to runner
#44
druvus
closed
11 months ago
0
Added cleaning of temporary files into the wrapper script. Also added…
#43
jaclew
closed
11 months ago
0
Add typing to helper functions
#42
druvus
closed
11 months ago
0
Refactor Function Organization into Helper Submodules
#41
druvus
closed
11 months ago
0
Added screenshots of new layout.
#40
KristofferSandas
closed
11 months ago
0
Fixed two pandas df bugs.
#39
KristofferSandas
closed
11 months ago
0
Refactoring UI Text and Labels for Clarity in nanometa_gui.py
#38
druvus
closed
11 months ago
0
Improved Configuration Loading and Error Handling in nanometa_live Backend
#37
druvus
closed
11 months ago
0
Remove file
#36
druvus
closed
11 months ago
0
Refactoring and Feature Enhancement for Improved Workflow Execution and Maintainability
#35
druvus
closed
11 months ago
0
Enhancements and Bug Fixes for Nanometa Live Pipeline
#34
druvus
closed
11 months ago
0
Add Termination Logic to fetch_species_data Function for Zero Results or Errors
#33
druvus
closed
11 months ago
0
Update update_yaml_config_with_taxid Function to Support Nested Configurations
#32
druvus
closed
11 months ago
0
Updated nanometa_live_env.yaml with all dependencies.
#31
KristofferSandas
closed
11 months ago
0
Update read_species_from_config to Support Nested Config Format
#30
druvus
closed
11 months ago
0
Corrected typo in fastp directory
#29
KristofferSandas
closed
11 months ago
0
Extend YAML Config Update Functionality to Include species_of_interest
#28
druvus
closed
11 months ago
0
Improvment in nanometa-new and addition of nanometa-prepare
#27
druvus
closed
11 months ago
0
Exit script added and working.
#26
KristofferSandas
closed
11 months ago
0
Added more info about blast validation parameters in GUI info.
#25
KristofferSandas
closed
11 months ago
0
Added info buttons and modals.
#24
KristofferSandas
closed
11 months ago
0
Added fastp reports to temp files remove function
#23
KristofferSandas
closed
11 months ago
0
filter-settings-fix
#22
KristofferSandas
closed
11 months ago
0
Added filter specifics to gui.
#21
KristofferSandas
closed
11 months ago
0
Refactor execute_snakemake function to dynamically generate snakemake_cmd based on configuration settings.
#20
druvus
closed
11 months ago
0
Next