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GoekeLab
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m6anet
Detection of m6A from direct RNA-Seq data
https://m6anet.readthedocs.io/
MIT License
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m6Anet dataprep error
#103
rania-o
closed
1 year ago
3
m6anet inference pooling replicates
#102
sunsetyerin
closed
1 year ago
2
pip install error for m6anet==2.0.1
#101
Stakaitis
closed
1 year ago
2
m6anet inference result format
#100
sunsetyerin
closed
1 year ago
1
Question about Fig1d in the paper
#99
thadasps
closed
1 year ago
1
m6anet inference pooling replicates
#98
sunsetyerin
closed
1 year ago
3
pip does not install latest version
#97
mnsmar
closed
1 year ago
4
Reproducing HEK293T result
#96
haotianteng
closed
1 year ago
12
[Request]: eventalign.tsv.gz support
#95
loganylchen
closed
11 months ago
2
Question regarding supplementary 6 table
#93
kwonej0617
closed
11 months ago
10
Can m6anet pick up m1A signal?
#92
ruicatxiao
closed
1 year ago
1
add link to arabidopsis paper on patch note
#90
chrishendra93
closed
1 year ago
0
Development
#89
chrishendra93
closed
1 year ago
0
Patch note
#88
chrishendra93
closed
1 year ago
0
add option to compress dataprep results
#87
chrishendra93
closed
1 year ago
0
add script to convert old file format to new one
#86
chrishendra93
closed
1 year ago
0
add deprecated module with the same API as m6anet 1.1.2 with deprecat…
#85
chrishendra93
closed
1 year ago
0
Doc string
#84
chrishendra93
closed
1 year ago
0
add github actions
#83
chrishendra93
closed
1 year ago
0
add test for replicates
#82
chrishendra93
closed
1 year ago
0
add arabidopsis model and norm factor
#81
chrishendra93
closed
1 year ago
0
add test for dataprep and inference
#80
chrishendra93
closed
1 year ago
0
Single Script
#78
chrishendra93
closed
1 year ago
0
How do I get the files in the 'm6Anet requires eventalign.txt from nanopolish' step?
#77
king-wang-cmd
closed
1 year ago
1
genomic position
#76
acarmas1
closed
1 year ago
16
received 0 items of ancdata
#75
dywang0323
closed
1 year ago
2
m6anet-run_inference, IndexError: single positional indexer is out-of-bounds
#74
huawen-poppy
closed
1 year ago
8
Some Feedback and Questions
#72
tjprins
closed
1 year ago
3
How can I get the m6a sites data please?
#70
LuckyMLucy
closed
1 year ago
1
nf-m6anet NextFlow pipeline
#68
MaestSi
closed
1 year ago
0
Where to find read-level probability?
#67
haotianteng
closed
1 year ago
1
M6anet pytest
#66
chrishendra93
closed
1 year ago
0
Revert "add merge test"
#65
chrishendra93
closed
1 year ago
0
add merge test
#64
chrishendra93
closed
1 year ago
0
cannot convert float NaN to integer
#63
William-chen777
closed
1 year ago
4
The kit used for the cell line
#60
LuckyMLucy
closed
1 year ago
2
ImportError: cannot import name 'TypeAlias' from 'typing_extensions' (/usr/lib/python3/dist-packages/typing_extensions.py)
#59
matthewstuartedwards
closed
1 year ago
6
m6anet -train on demo data : indexer out of bound error
#57
JiayiLi21
closed
1 year ago
3
Understanding embedding layer dimensions
#56
ChaseWLW
closed
1 year ago
2
how to train model on all middle A 5-mer motif
#55
JeremyQuo
closed
1 year ago
2
converting transcripts and transcriptomic position obtained through m6Anet into genomic coordinates
#54
rezarahman12
closed
1 year ago
13
m6anet-run_inference error
#53
rezarahman12
closed
1 year ago
2
Minor change 1.1.2
#52
chrishendra93
closed
1 year ago
0
Supplementary Table 5
#51
kwonej0617
closed
1 year ago
11
What are these kmers?
#50
gurbonaite
closed
1 year ago
7
Development
#49
chrishendra93
closed
1 year ago
0
m6anet publication
#48
kwonej0617
closed
1 year ago
1
output the read level modification probability
#47
guowb9
closed
1 year ago
3
PAR_Y or not
#45
MiphaZ
closed
1 year ago
5
Segmentation fault in running m6anet-run_inference
#44
kwonej0617
closed
1 year ago
17
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