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Griffan
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VerifyBamID
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
http://griffan.github.io/VerifyBamID/
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add segfault handler for debugging
#65
Griffan
closed
3 months ago
4
Update README.md
#64
yfarjoun
closed
4 months ago
0
Update README.md
#63
yfarjoun
closed
4 months ago
0
Running time is diff
#62
hulb0203
closed
3 months ago
10
VerifyBamID: Ensuring Accurate .mu and .UD File Creation
#61
shadizaheri
opened
6 months ago
2
Update tests to guard newly added features or modifications
#60
Griffan
closed
6 months ago
0
incorrect value or segfault for long-read data
#59
cheehongsg
closed
6 months ago
7
Error when running VerifyBamID with more than 4PCs
#58
lo2811
closed
7 months ago
5
Best practice for estimating contamination within the same ancestry
#57
Han-Cao
closed
3 months ago
1
--max-depth Doesn't Do Anything?
#56
michaelsykes
closed
11 months ago
4
Error from running VBID2 after installing from source
#55
poloarol
closed
11 months ago
2
Very high FREEMIX value with WES experiments
#54
rulixxx
opened
1 year ago
3
Insufficient Available markers, check input bam depth distribution in output pileup file after specifying --OutputPileup
#53
cangyilin
closed
1 year ago
1
Can verifyBamID2 be used to detect contamination in non-human species data?
#52
maruiqi0710
closed
11 months ago
1
Generating resource files
#51
z1242099843
closed
1 year ago
1
the bug about argument "--ignoreRG"
#50
WortJohn
opened
1 year ago
3
make fails with htslib 1.11
#49
nalawu
closed
1 year ago
8
After Downloading via Docker (and singularity), Fatal Error Appears: No such file or directory
#48
bioinfo-fiend
closed
1 year ago
4
VB2 on RNA shortgun sequecing
#47
manifestoso
opened
1 year ago
1
VBID2 may be underestimating intra-family contamination when applied to long reads (CCS)
#46
SHuang-Broad
opened
1 year ago
6
Segmentation fault (core dumped)
#45
AnqiZhang-HIT
closed
3 months ago
14
bug: --SVDPrefix required when --REFVCF supplied
#44
manifestoso
closed
1 year ago
8
Long read bam processing
#43
SHuang-Broad
opened
2 years ago
6
verifybamid2 bioconda native
#42
manifestoso
closed
2 years ago
1
Resource files for mouse data
#41
xie186
closed
3 months ago
1
ReferencePanel.vcf.gz
#40
yinbinqiu
closed
2 years ago
11
Insufficient Available markers?
#39
lingjoyo
closed
2 years ago
1
Segmentation fault
#38
jianbiaoli
closed
2 years ago
5
make fail "htslib/bgzf.h: No such file or directory"
#37
fp215
closed
3 months ago
1
CHIPMIX NA value
#36
iagooteroc
opened
2 years ago
1
Resource files for b38 exome
#35
dtaliun
closed
2 years ago
3
Memory leak error
#34
gevro
closed
2 years ago
6
Can VerifyBamID identify the source of contamination?
#33
ManavalanG
opened
2 years ago
2
Job runs out of memory in cluster
#32
iagooteroc
closed
2 years ago
17
Update dockerfile
#31
lmtani
closed
2 years ago
1
Question about the tool options
#30
u1200538
closed
3 years ago
4
make fails with htslib 1.13 (1.11 OK)
#29
myourshaw
closed
1 year ago
1
Getting the error message during the installation.
#28
u1200538
closed
3 years ago
3
Bam is either very-very shallow, or aligned to the wrong reference
#27
jazberna1
closed
3 years ago
2
chr prefix in resources files
#26
shadrinams
closed
3 years ago
1
VerifyBamID v2 vs v1
#25
xtmgah
closed
3 years ago
8
verifybamid2 exits with insufficient markers error message.
#24
carmelinacharalambous
closed
3 years ago
0
VBID2 not seeing read evidence even though it is present.
#23
yfarjoun
closed
3 years ago
10
create reference
#22
Myskiper
closed
3 years ago
1
error
#21
Myskiper
closed
3 years ago
6
Guidance on RNA-Seq / Tumor Data
#20
sstadick
closed
3 years ago
4
VerifyBamID libstdc++.so.6 version issues
#19
GuoTingYou
closed
4 years ago
2
verifybamid2 doesn't recognize command line parameters correctly
#18
eastreen
closed
4 years ago
13
Installation error
#17
GSBaohuaGu
closed
4 years ago
2
incorrect PCA coordinate for samples
#16
yuqiu77
closed
5 years ago
2
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