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HadrienG
/
InSilicoSeq
:rocket: A sequencing simulator
https://insilicoseq.readthedocs.io
MIT License
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32
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Dependency between seed and number of threads (cpus)
#215
izaak-coleman
opened
2 years ago
1
Are quality filtered reads required to create your own error model?
#214
o-william-white
closed
10 months ago
1
Generating reads that only start in a given position
#213
TheGreatJack
opened
2 years ago
0
Error message python: "TypeError: data should be a string, bytes, bytearray, Seq, or MutableSeq object"
#212
Gandasegui
closed
2 years ago
7
warnings of deprecated functions biopython 1.79, but `generate` still works
#211
mmp3
closed
10 months ago
0
Write reads to disk immediately instead of caching them in RAM
#210
sebschmi
opened
2 years ago
0
Typo in documentation and possible bug
#209
JHarrisonEcoEvo
closed
10 months ago
5
Memory leakage when using abundance file
#208
cimendes
opened
2 years ago
15
Biopython 1.79 issue
#207
dturaev
closed
2 years ago
1
ImportError: Bio.Alphabet 1.78 - Please Help
#206
slvrshot
closed
3 years ago
1
iss util fails to remove tmp files when using multiple genomes if chromosomes have the same names
#205
sylvainschmitt
closed
3 years ago
2
Fix typo
#204
richelbilderbeek
closed
3 years ago
0
[WIP] fix for #202 - v1.5.3
#203
HadrienG
closed
3 years ago
1
Entrez error: Failed to find tag 'AssemblyStatusSort'
#202
HadrienG
closed
3 years ago
0
UserWarning: semaphore_tracker Error
#201
Tj-Idowu
closed
1 year ago
1
Seems like the error free profile performs worse than the error profile
#200
Kumereng
closed
3 years ago
1
[WIP] 1.5.2
#199
HadrienG
closed
3 years ago
1
ERROR:iss.app:Failed to open genome(s) file:[Errno 2] No such file or directory:
#198
slvrshot
closed
3 years ago
2
Simulating exomes
#197
cilliannolan
closed
10 months ago
1
abundance.txt when simulating from a single input genome
#196
abhijna
closed
3 years ago
1
iss generate does not simulate the number of reads requested
#195
sergioSEa
closed
3 years ago
3
iss generate simulates fewer reads than requested
#194
sergioSEa
closed
3 years ago
0
Using kde ErrorModel problem!
#193
Wanli-HE
closed
10 months ago
2
1.5.1
#192
HadrienG
closed
3 years ago
1
coverage_file documentation
#191
multimeric
closed
3 years ago
4
InSilicoSeq compatibility with Biopython 1.78
#190
emollier
closed
3 years ago
2
ImportError: Bio.Alphabet with Biopython 1.78
#189
domenico-simone
closed
3 years ago
3
Huge number of tmp files causing issues on cloud VM
#188
aquagenomics
opened
3 years ago
1
Installing in Windows Subsystem for Linux?
#187
bramvandijk88
closed
3 years ago
0
Unexpected distribution of insert sizes from paired-end HiSeq simulation
#186
allind
closed
2 weeks ago
2
Allow using an abundance file with --draft
#185
apcamargo
closed
3 years ago
2
circular genomes?
#184
dpellow
opened
3 years ago
1
Multi-fasta subset simulation
#183
Shahab-Sa
closed
3 years ago
3
Bump numpy from 1.18.5 to 1.19.0
#182
dependabot-preview[bot]
closed
3 years ago
1
Bump scipy from 1.4.1 to 1.5.0
#181
dependabot-preview[bot]
closed
3 years ago
1
Bump requests from 2.23.0 to 2.24.0
#180
dependabot-preview[bot]
closed
3 years ago
1
Bump pysam from 0.15.4 to 0.16.0.1
#179
dependabot-preview[bot]
closed
3 years ago
1
Bump codecov from 2.1.4 to 2.1.7
#178
dependabot-preview[bot]
closed
3 years ago
1
AttributeError: 'Namespace' object has no attribute 'quiet'
#177
sikuan
closed
3 years ago
1
Bump pysam from 0.15.4 to 0.16.0
#176
dependabot-preview[bot]
closed
4 years ago
2
HiSeq reads length
#175
gregoruar
closed
3 years ago
1
Bump numpy from 1.18.4 to 1.18.5
#174
dependabot-preview[bot]
closed
4 years ago
1
Bump codecov from 2.1.3 to 2.1.4
#173
dependabot-preview[bot]
closed
4 years ago
1
1.5.0
#172
HadrienG
closed
3 years ago
1
Bump biopython from 1.76 to 1.77
#171
dependabot-preview[bot]
closed
4 years ago
2
Bump codecov from 2.0.22 to 2.1.3
#170
dependabot-preview[bot]
closed
4 years ago
1
Bump codecov from 2.0.22 to 2.1.1
#169
dependabot-preview[bot]
closed
4 years ago
2
Bump codecov from 2.0.22 to 2.1.0
#168
dependabot-preview[bot]
closed
4 years ago
2
edited
#167
dpellow
closed
4 years ago
0
Bump joblib from 0.14.1 to 0.15.1
#166
dependabot-preview[bot]
closed
4 years ago
2
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