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HuttleyLab
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DiverseSeq
Tools for analysis of sequence divergence
BSD 3-Clause "New" or "Revised" License
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Bump ruff from 0.7.0 to 0.7.1
#69
dependabot[bot]
opened
1 day ago
2
Modify ctree apps
#68
GavinHuttley
closed
4 days ago
2
ENH: use numba for kmer processing
#67
rmcar17
closed
5 days ago
3
Bump ruff from 0.6.8 to 0.7.0
#66
dependabot[bot]
closed
1 week ago
2
Bump ruff from 0.6.8 to 0.6.9
#65
dependabot[bot]
closed
1 week ago
2
Bump ruff from 0.6.7 to 0.6.8
#64
dependabot[bot]
closed
4 weeks ago
1
ENH: rewrite data store
#63
GavinHuttley
closed
1 month ago
1
DEV: update daily test against cogent3 develop branch
#62
GavinHuttley
closed
1 month ago
1
Bump ruff from 0.6.5 to 0.6.7
#61
dependabot[bot]
closed
1 month ago
1
Bump astral-sh/setup-uv from 2 to 3
#60
dependabot[bot]
closed
1 month ago
1
DEV: fix paths in coverage reports
#59
rmcar17
closed
1 month ago
2
ENH: split `dvs_ctree` app into `dvs_ctree` and `dvs_par_ctree`
#58
rmcar17
closed
1 month ago
2
ENH: add ctree dist app
#57
rmcar17
closed
1 month ago
2
MAINT: use disable parameter for progress bar hiding
#56
rmcar17
closed
1 month ago
1
DEV: added cron based check against cogent3 develop branch
#55
GavinHuttley
closed
1 month ago
1
ENH: compute_mash_distances updating progress bar for parallel execution
#54
GavinHuttley
closed
1 month ago
1
ENH: current dvs_ctree should be split into separate apps
#53
GavinHuttley
closed
1 month ago
0
ENH: provide mash distance as a standalone app
#52
GavinHuttley
opened
1 month ago
0
Bump ruff from 0.6.3 to 0.6.5
#51
dependabot[bot]
closed
1 month ago
0
ENH: add `ctree` CLI and app
#50
rmcar17
closed
1 month ago
2
Bump ruff from 0.6.3 to 0.6.4
#49
dependabot[bot]
closed
1 month ago
1
MAINT: address deprecation
#48
GavinHuttley
closed
1 month ago
1
Bump ruff from 0.6.2 to 0.6.3
#47
dependabot[bot]
closed
1 month ago
1
REL: bumped version to 2024.9.2a1
#46
GavinHuttley
closed
1 month ago
1
Simplify code
#45
GavinHuttley
closed
1 month ago
1
REL: minor release improving docs
#44
GavinHuttley
closed
2 months ago
0
DOC: simplify the README
#43
GavinHuttley
closed
2 months ago
1
MAINT: misc small fixes
#42
GavinHuttley
closed
2 months ago
1
REL: another version bump to get actions working
#41
GavinHuttley
closed
2 months ago
1
REL: more work on release action
#40
GavinHuttley
closed
2 months ago
1
DOC: fix docstring and bump version 2024.8.26a4
#39
GavinHuttley
closed
2 months ago
0
REL: bumped version and fixed release action
#38
GavinHuttley
closed
2 months ago
0
REL: bump version
#37
GavinHuttley
closed
2 months ago
1
DOC: updated badges
#36
GavinHuttley
closed
2 months ago
1
DEV: renamed project to diverse_seq
#35
GavinHuttley
closed
2 months ago
0
DEV: added release.yml
#34
GavinHuttley
closed
2 months ago
0
DEV: now use the released version of cogent3, yay!
#33
GavinHuttley
closed
2 months ago
0
REL: prepping for initial release
#32
GavinHuttley
closed
2 months ago
0
DOC: overview statement
#31
GavinHuttley
closed
2 months ago
0
DOC: update docs
#30
GavinHuttley
closed
2 months ago
0
DEV: added some README badges
#29
GavinHuttley
closed
2 months ago
0
DEV: address codacy warnings related to apps
#28
GavinHuttley
closed
2 months ago
0
DEV: add codeql workflow
#27
GavinHuttley
closed
2 months ago
1
DEV: update linting workflow
#26
GavinHuttley
closed
2 months ago
0
implement support for using MPI
#25
GavinHuttley
opened
2 months ago
0
Bump ruff from 0.5.7 to 0.6.1
#24
dependabot[bot]
closed
2 months ago
0
some tests related to writing hdf5 are failing on windows
#23
GavinHuttley
opened
2 months ago
0
DOC: manuscript related tasks
#22
GavinHuttley
opened
2 months ago
2
Merged in changes from 13 dvgt plugins branch
#21
GavinHuttley
closed
2 months ago
0
Import Divergent.util NotImplementedError
#20
Muquesting
closed
3 months ago
0
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