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HuttleyLab
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DiverseSeq
Tools for analysis of sequence divergence
BSD 3-Clause "New" or "Revised" License
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Mods for composable app usability
#84
GavinHuttley
closed
3 days ago
2
Bump ruff from 0.7.3 to 0.7.4
#83
dependabot[bot]
opened
6 days ago
2
Merge changes from main
#82
GavinHuttley
closed
1 week ago
2
Linted paper scripts and notebooks
#81
GavinHuttley
closed
1 week ago
2
DOC: update intro and add link to preprint
#80
GavinHuttley
closed
1 week ago
2
Bump ruff from 0.7.2 to 0.7.3
#79
dependabot[bot]
closed
1 week ago
2
REL: bumped release to 2024.11.8a3
#78
GavinHuttley
closed
2 weeks ago
2
REL: bumped release 2024.11.8a2
#77
GavinHuttley
closed
2 weeks ago
2
REL: bump version to 2024.11.8a1
#76
GavinHuttley
closed
2 weeks ago
2
MAINT: updates and tests
#75
GavinHuttley
closed
2 weeks ago
2
DOC: include ctree in the README
#74
GavinHuttley
closed
2 weeks ago
2
Fix newick output
#73
GavinHuttley
closed
2 weeks ago
2
Bump ruff from 0.7.1 to 0.7.2
#72
dependabot[bot]
closed
2 weeks ago
2
ENH: Optimise CLI Usage of `ctree`
#71
rmcar17
closed
2 weeks ago
2
Misc
#70
GavinHuttley
closed
3 weeks ago
2
Bump ruff from 0.7.0 to 0.7.1
#69
dependabot[bot]
closed
3 weeks ago
2
Modify ctree apps
#68
GavinHuttley
closed
1 month ago
2
ENH: use numba for kmer processing
#67
rmcar17
closed
1 month ago
3
Bump ruff from 0.6.8 to 0.7.0
#66
dependabot[bot]
closed
1 month ago
2
Bump ruff from 0.6.8 to 0.6.9
#65
dependabot[bot]
closed
1 month ago
2
Bump ruff from 0.6.7 to 0.6.8
#64
dependabot[bot]
closed
1 month ago
1
ENH: rewrite data store
#63
GavinHuttley
closed
2 months ago
1
DEV: update daily test against cogent3 develop branch
#62
GavinHuttley
closed
2 months ago
1
Bump ruff from 0.6.5 to 0.6.7
#61
dependabot[bot]
closed
2 months ago
1
Bump astral-sh/setup-uv from 2 to 3
#60
dependabot[bot]
closed
2 months ago
1
DEV: fix paths in coverage reports
#59
rmcar17
closed
2 months ago
2
ENH: split `dvs_ctree` app into `dvs_ctree` and `dvs_par_ctree`
#58
rmcar17
closed
2 months ago
2
ENH: add ctree dist app
#57
rmcar17
closed
2 months ago
2
MAINT: use disable parameter for progress bar hiding
#56
rmcar17
closed
2 months ago
1
DEV: added cron based check against cogent3 develop branch
#55
GavinHuttley
closed
2 months ago
1
ENH: compute_mash_distances updating progress bar for parallel execution
#54
GavinHuttley
closed
2 months ago
1
ENH: current dvs_ctree should be split into separate apps
#53
GavinHuttley
closed
2 months ago
0
ENH: provide mash distance as a standalone app
#52
GavinHuttley
opened
2 months ago
0
Bump ruff from 0.6.3 to 0.6.5
#51
dependabot[bot]
closed
2 months ago
0
ENH: add `ctree` CLI and app
#50
rmcar17
closed
2 months ago
2
Bump ruff from 0.6.3 to 0.6.4
#49
dependabot[bot]
closed
2 months ago
1
MAINT: address deprecation
#48
GavinHuttley
closed
2 months ago
1
Bump ruff from 0.6.2 to 0.6.3
#47
dependabot[bot]
closed
2 months ago
1
REL: bumped version to 2024.9.2a1
#46
GavinHuttley
closed
2 months ago
1
Simplify code
#45
GavinHuttley
closed
2 months ago
1
REL: minor release improving docs
#44
GavinHuttley
closed
2 months ago
0
DOC: simplify the README
#43
GavinHuttley
closed
2 months ago
1
MAINT: misc small fixes
#42
GavinHuttley
closed
2 months ago
1
REL: another version bump to get actions working
#41
GavinHuttley
closed
3 months ago
1
REL: more work on release action
#40
GavinHuttley
closed
3 months ago
1
DOC: fix docstring and bump version 2024.8.26a4
#39
GavinHuttley
closed
3 months ago
0
REL: bumped version and fixed release action
#38
GavinHuttley
closed
3 months ago
0
REL: bump version
#37
GavinHuttley
closed
3 months ago
1
DOC: updated badges
#36
GavinHuttley
closed
3 months ago
1
DEV: renamed project to diverse_seq
#35
GavinHuttley
closed
3 months ago
0
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