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ICB-DCM
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parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
MIT License
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Fix data race in aggregateLikelihood
#411
dweindl
closed
4 days ago
1
GHA: parallel compilation for benchmark problems
#410
dweindl
closed
1 week ago
1
Update amici to v0.28.0
#409
dweindl
closed
1 week ago
1
PEtab: Fix initial state from condition table
#408
dweindl
closed
2 weeks ago
1
HDF5 generation: Don't write obsolete sens_ind
#407
dweindl
closed
2 weeks ago
1
HDF5 generation: write only most-relevant amici options
#406
dweindl
closed
2 weeks ago
1
Set amici::ExpData::id when creating ExpData
#405
dweindl
closed
2 weeks ago
1
Tests: get benchmark model paths from python library
#404
dweindl
closed
2 weeks ago
1
GHA: Extend benchmark collection tests
#403
dweindl
closed
4 weeks ago
1
PEtab import: option to ignore initialization prior
#402
dweindl
closed
1 month ago
1
Convert priors in benchmark problems to measurements
#401
dweindl
closed
1 month ago
1
Run simulations with json I/O
#400
dweindl
closed
2 weeks ago
1
Clang format
#399
dweindl
opened
1 month ago
1
Update AMICI to v0.27.0
#398
dweindl
closed
1 month ago
1
Reduce clang warnings
#397
dweindl
closed
1 month ago
1
Update AMICI to v0.26.3-26-g9f562667
#396
dweindl
closed
1 month ago
1
Set python package version via setuptools_scm
#395
dweindl
closed
1 month ago
1
PEtab pipeline: Only compute sensitivities with respect to optimized …
#394
dweindl
closed
1 month ago
1
Support for forward sensitivities
#393
dweindl
closed
1 month ago
1
Set amici default options in generated HDF5 input files
#392
dweindl
closed
1 month ago
1
Fix find_package / find_dependency issues with different SuiteSparse versions from amici and ceres
#391
dweindl
opened
1 month ago
0
Use Ubuntu 24.04
#390
dweindl
closed
1 month ago
1
Upgrade dockerhub image and GHA to use Ubuntu 24.04
#389
dweindl
opened
1 month ago
0
Update amici to v0.26.3-20-g8253a97d
#388
dweindl
closed
1 month ago
1
Update amici to v0.26.1
#387
dweindl
closed
2 months ago
1
Fix RTD build
#386
dweindl
closed
2 months ago
0
GHA: Attempt dockerhub upload only if secrets are accessible
#385
dweindl
closed
2 months ago
0
PEtab import: Priors aren't support -> raise
#384
dweindl
closed
2 months ago
1
Bump actions/cache from 3 to 4
#383
dependabot[bot]
closed
2 months ago
2
Release 0.4.10
#382
dweindl
closed
11 months ago
1
setup.py -> pyproject.toml
#381
dweindl
closed
11 months ago
1
PEtab pipeline: Only compute sensitivities with respect to optimized parameters
#380
dweindl
opened
11 months ago
1
CITATION.cff
#379
dweindl
closed
11 months ago
1
Update AMICI to v0.20.0
#378
dweindl
closed
11 months ago
1
Updated elgohr/Publish-Docker-Github-Action to a supported version (v5)
#377
elgohr
closed
1 year ago
3
Update image
#376
dweindl
closed
1 year ago
1
Add minibatch documentation to RTD
#375
dweindl
closed
2 years ago
1
Docker clang
#374
dweindl
closed
2 years ago
1
Update AMICI to v0.12.0
#373
dweindl
closed
2 years ago
1
Update to changed petab test suite
#372
dweindl
closed
2 years ago
1
Update AMICI to v0.11.28
#371
dweindl
closed
2 years ago
1
Release 0.4.9
#370
dweindl
closed
2 years ago
1
Update AMICI to v0.11.23
#369
dweindl
closed
2 years ago
1
fix #367
#368
MerktSimon
closed
2 years ago
2
Update master branch of GoogleTestSuite to main
#367
MerktSimon
closed
2 years ago
2
Improve hierarchical optimization preprocessing
#366
dweindl
closed
3 years ago
1
KeyError: 'observableParameters'
#365
dweindl
closed
2 years ago
0
Update AMICI to v0.11.20
#364
dweindl
closed
3 years ago
1
Replace pthreads by C++ thread/mutex/condition
#363
dweindl
closed
11 months ago
3
Release 0.4.8
#362
dweindl
closed
3 years ago
1
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