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IHEC
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epiATLAS-metadata-harmonization
IHEC metadata merging and cleanup
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IHECRE00001010
#92
quirinmanz
closed
10 months ago
0
Encode sample disease vs donor_health_status: IHECRE00000966|IHECRE00000982
#91
quirinmanz
closed
10 months ago
0
Encode sample disease vs donor_health_status: IHECRE00000966
#90
quirinmanz
closed
10 months ago
1
IHECRE00000928|IHECRE00000964
#89
quirinmanz
closed
10 months ago
0
IHECRE00001862|IHECRE00001863|IHECRE00001864|IHECRE00001865|IHECRE00001866|IHECRE00001867|IHECRE00001868|IHECRE00001870|IHECRE00001871|IHECRE00001872
#88
quirinmanz
closed
10 months ago
0
IHECRE00000001 Disease
#87
quirinmanz
closed
10 months ago
0
Add a normalized version of `harmonized_donor_age`
#86
IsmailM
closed
1 year ago
1
Add a column for the EpiRR ID without versioning
#85
quirinmanz
closed
1 year ago
0
Change harmonized_sample_ontology_intermediate from "CD34-negative, CD41-positive, CD42-positive megakaryocyte cell" to "myeloid cell"
#84
quirinmanz
closed
1 year ago
0
Change harmonized_sample_ontology_intermediate for IHECRE00004670.5 and IHECRE00001892.7 to B cell derived cell line
#83
quirinmanz
closed
1 year ago
0
Missing cell_type and sample_ontology_curie for primary cells with tissue_type 'mesenchyme' IHECRE00002037.1 and IHECRE00002055.1
#82
quirinmanz
closed
1 year ago
2
Health Status Unknown vs Healthy vs None vs Unknown
#81
quirinmanz
closed
2 years ago
1
NCIM for "self-inflicted Gunshot Woulnd (sigsw)"
#80
quirinmanz
closed
2 years ago
1
NCIM for "Head Trauma"
#79
quirinmanz
closed
2 years ago
1
Recheck NCIM CUIs
#78
quirinmanz
closed
2 years ago
1
NCIM term for cell line "DOHH2" for IHECRE00004693
#77
quirinmanz
closed
2 years ago
1
NCIM term for cell line "SK-N-SH" for IHECRE00004628
#76
quirinmanz
closed
2 years ago
1
NCIM term for cell line "SUDHL6" for IHECRE00004673
#75
quirinmanz
closed
2 years ago
2
NCIM Term for cell line "NCI-H929" for IHECRE00004639
#74
quirinmanz
closed
2 years ago
3
NCIM Term for cell line "PC-3" IHECRE00003709
#73
quirinmanz
closed
2 years ago
1
Ontology for disease "Blunt force trauma"
#72
quirinmanz
closed
2 years ago
2
113 AMED-CREST manual entries to disease or donor_health_status
#71
quirinmanz
closed
2 years ago
2
Unmerge DISEASE_ONTOLOGY_CURIE and DONOR_HEALTH_STATUS_ONTOLOGY_CURIE
#70
quirinmanz
closed
2 years ago
0
Remove mouse entries
#69
mlist
closed
2 years ago
1
ontology for "placenta (basal plate and villi) tissue" IHECRE00004880.1 IHECRE00004884.1 IHECRE00004908.1
#68
quirinmanz
closed
1 year ago
2
ontology for "placenta (amniotic membrane) tissue" IHECRE00004877.1 IHECRE00004912.1
#67
quirinmanz
closed
1 year ago
1
wrong biomaterial type for DEEP samples
#66
quirinmanz
closed
2 years ago
1
"non parenchymal" cells not in CL
#65
quirinmanz
closed
2 years ago
1
Missing CL for "ipsc" and "early neuron" for Entries IHECRE00003724.1, IHECRE00003727.1, IHECRE00003726.1, IHECRE00003729.1
#64
quirinmanz
closed
1 year ago
13
missing information for some AMED-CREST entries
#63
quirinmanz
closed
2 years ago
3
Wrong biomaterial_type for KNIH entries
#62
quirinmanz
closed
2 years ago
1
stromal cells with ontology fibroblast of mammary gland
#61
quirinmanz
closed
2 years ago
3
ontology for normal human stomach foveolar epithelial cells (surface mucous cells)
#60
quirinmanz
closed
2 years ago
1
mesendoderm vs. mesodermal cell
#59
quirinmanz
closed
2 years ago
1
Conflict between ontology and tissue_type for colon primary tissues
#58
quirinmanz
closed
2 years ago
1
Metadata for ENCODE and Roadmap samples
#57
demuellae
closed
2 years ago
2
Disagreement between ontology and free-text
#56
quirinmanz
closed
2 years ago
0
create new branch for old EpiRR-version and merge update branch
#55
quirinmanz
closed
2 years ago
0
Remove columns "phenotype", "origin_sample", "donor_id", "taxon_id"
#54
quirinmanz
closed
2 years ago
2
Fill blanks in sample_ontology_term
#53
mlist
closed
2 years ago
0
uberon for "placenta (villi) tissue" IHECRE00004883.1 IHECRE00004897.1 IHECRE00004900.1
#52
quirinmanz
closed
1 year ago
2
CL for "breast variant human mammary epithelial cell"
#51
quirinmanz
closed
2 years ago
2
CL for "ganglionic eminence neural stem and progenitor cells" and "cortex neural stem and progenitor cells" IHECRE00004887.1 IHECRE00004894.1 IHECRE00004895.1 IHECRE00004902.1 IHECRE00004904.1 IHECRE00004910.1
#50
quirinmanz
closed
1 year ago
4
missing EFO ontologies for "trophoblast stem cell" IHECRE00004596.1 IHECRE00004597.1 IHECRE00004598.1 IHECRE00004599.1 IHECRE00004600.1 IHECRE00004601.1 IHECRE00004720 IHECRE00004721 IHECRE00004722
#49
quirinmanz
closed
1 year ago
13
IPSC EFO Term
#48
quirinmanz
closed
2 years ago
1
Differences between versions due to EpiRR update
#47
quirinmanz
closed
2 years ago
4
Rheumatic Disease has no NCIm Term
#46
quirinmanz
closed
2 years ago
3
Title case transformation to improve the harmonization of the whole table
#45
GFrosi
closed
2 years ago
1
Remove 'Alive' term from the Health status column.
#44
GFrosi
closed
2 years ago
0
Programmatically check if the cell_type information matches with the ontology description term
#43
quirinmanz
closed
2 years ago
0
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