IndianaBiosciences toxapp issues

IndianaBiosciences / toxapp

A publicly-available industry-inspired Collaborative Toxicogenomics analysis platform

Apache License 2.0

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issues

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Trellis by Experiment enhancement

#51 bradjmills opened 4 years ago
0
RNA-seq upload does not work with csv file

#50 sutherlandjeff opened 4 years ago
1
Revisit BMD logging in completion email

#49 bradjmills closed 5 years ago
1
BMD step failed on large mouse RNA Seq file

#48 bradjmills closed 5 years ago
1
BMD step failing if not using all of the experiment columns in an RNA Seq file

#47 bradjmills opened 5 years ago
1
large exports of gene fold change data don't work

#46 sutherlandjeff opened 5 years ago
0
CEL files not found when lower case .cel is used

#45 sutherlandjeff opened 5 years ago
0
configure mapping from platform to array selection as part of computation

#44 sutherlandjeff opened 5 years ago
0
Want to go back and forth from gene view to map chart

#43 gazkikouken opened 5 years ago
0
filtering for RNA-seq is specific to rat and doesn't work for mouse or any other org

#42 sutherlandjeff opened 5 years ago
0
refactor sample pkl file write-out

#41 sutherlandjeff opened 5 years ago
0
Preprocessing RNA-seq file - wrong location

#40 sutherlandjeff opened 5 years ago
0
Preprocessor throwing divide by zero error if gene column header is blank

#39 bradjmills closed 5 years ago
1
Delete issue from Sample Add dialogue

#38 bradjmills opened 5 years ago
1
Run half of bmd in background

#37 gazkikouken opened 5 years ago
1
BMD completed steps missing from email reports

#36 bradjmills closed 5 years ago
0
Links to static content, e.g. User Guides

#35 bradjmills closed 5 years ago
0
Gap assessment and action items for documentation (including Wiki entries) now that repository set to Public

#34 bradjmills opened 5 years ago
0
Data Processing does not account for double carriage returns

#33 gazkikouken closed 5 years ago
1
robots.txt

#32 gazkikouken closed 5 years ago
0
Add in the ability to auto export to pivot table when exporting results

#31 gazkikouken opened 5 years ago
0
adding experiments from study

#30 sutherlandjeff opened 6 years ago
0
missing PathNR correlation on Abbvie test experiment

#29 sutherlandjeff opened 6 years ago
0
experiment name autopopulate

#28 sutherlandjeff closed 6 years ago
1
Should remove the default Django Group permissions option when Adding a Study. Private or Public is sufficient for now, and we haven't implemented a mechanism for defining Groups yet. May be a useful feature as an enhancement later so that companies or work groups can share results.

#27 bradjmills closed 6 years ago
1
trellis chart

#26 sutherlandjeff opened 6 years ago
0
omeprazole experiments missing

#25 sutherlandjeff closed 5 years ago
0
Corteva Ctox internal instance data loading error

#24 kaminjj closed 6 years ago
2
Need to have expression_ctl to be larger digits due to RNAseq counts

#23 gazkikouken closed 6 years ago
0
__all__ or exclude pose Security risk

#22 gazkikouken closed 6 years ago
1
Hard Coded Filter

#21 gazkikouken closed 6 years ago
0
Mobile chart views

#20 gazkikouken closed 6 years ago
1
Charts need a larger value to accommodate long feature labels and color key

#19 gazkikouken closed 6 years ago
0
Add more appropriate fix for paths

#18 gazkikouken closed 6 years ago
0
Pickling small floating point differences

#17 gazkikouken closed 6 years ago
0
could separate the pruning process from selection of color (i.e. score) to use among redundant pathways

#16 gazkikouken closed 6 years ago
1
Arbitrary value used in treemap for height

#15 gazkikouken closed 6 years ago
0
Use map_fold_change_from_exp instead of map_fold_change_data

#14 gazkikouken closed 6 years ago
0
Need to clean up paths

#13 gazkikouken closed 6 years ago
0
Add Additional Tests

#12 gazkikouken closed 6 years ago
0
Connect to correct logger

#11 gazkikouken closed 6 years ago
0
improve search

#10 sutherlandjeff closed 5 years ago
0
Link to report for RNAseq analysis not created

#9 dhrobertson opened 6 years ago
0
Bug: n_experiments not defined in json for submission

#8 dhrobertson opened 6 years ago
0
Django -- filters fail for most recent versions of django code

#7 dhrobertson opened 6 years ago
0
pathway results view

#6 sutherlandjeff opened 6 years ago
0
renaming samples

#5 sutherlandjeff opened 6 years ago
0
improve search function

#4 sutherlandjeff closed 5 years ago
0
Filter: Module by GO/PATHWAY Field

#3 dhrobertson opened 6 years ago
0
Filter: Slider Limits for Key Values

#2 dhrobertson opened 6 years ago
0