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JinmiaoChenLab
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cytofkit
cytofkit: an integrated flow/mass cytometry data analysis pipeline
http://jinmiaochenlab.github.io/cytofkit/
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missing tSNE in the result
#45
StarXian
opened
6 years ago
3
"toplevel" invalid command name
#44
mvetill
opened
6 years ago
1
Change in # of markers in running message?
#43
AbbyKimball
opened
6 years ago
0
CyTOFKit and computer cluster
#42
CNicholasMDA
opened
6 years ago
0
cytofkit_analyzedFCS files are not created properly
#41
smanne07
opened
6 years ago
6
generate cluster plot and color by samples
#40
ShrutiMarwaha
opened
6 years ago
0
ERROR: The last keyword is dropped. uneven number of tokens: 585
#39
AbbyKimball
closed
6 years ago
2
Incompatibility with R 3.5
#38
rrotkopf
closed
6 years ago
5
cytof_cluster does not contain Rphenograph_k argument
#37
classycammy
opened
6 years ago
5
problems with R v3.5.0
#36
nkhanbham
opened
6 years ago
5
Closing session
#35
v-janelle
opened
6 years ago
1
Phenograph: increase nearest neighbors
#34
Taimie44
closed
6 years ago
1
Error when extracting expression data using Cytofkit GUI
#33
Gesseca
opened
6 years ago
1
Is phenograph deterministic?
#32
lconde-ucl
opened
6 years ago
5
Run Phenograph Clustering on FCS file with tSNE Parameters
#31
myles5000
opened
6 years ago
3
[Feature Request] Ability to shorten/modify file names during initial FCS upload
#30
mleipold
opened
6 years ago
1
High Sierra-related issues for installing Github v1.11.3 Cytofkit
#29
mleipold
opened
6 years ago
2
Cell Percentages
#28
myles5000
opened
6 years ago
5
how to change the sample plot color
#27
uchicagoxiao
opened
6 years ago
2
[Feature request] Allow customized tSNE perplexity and iterations
#26
esimonds
opened
6 years ago
1
[Feature request] Show verbose Rtsne output
#25
esimonds
opened
6 years ago
0
FlowSOM is not showing up when cytofkit_GUI() is run
#24
ghost
closed
6 years ago
4
cannot load library("cytofkit")
#23
uchicagoxiao
closed
6 years ago
5
[v1.10.0] Expression level plots are not scaled properly
#22
esimonds
opened
6 years ago
12
I have one more question, when I installed the R in computer, when I tried to run library ('cytofkit'), it showed like this,
#21
liyan99
closed
6 years ago
2
when I run cytofkit in GUI, recently the results showed that all the markers (not the markers I selected) has been include the cluster analysis
#20
liyan99
opened
6 years ago
13
Bug in cytofkit() fcsFiles parameter
#19
esimonds
closed
6 years ago
2
Selecting All Channels
#18
ghost
closed
6 years ago
9
cannot allocate vector of size 1.1 Gb
#17
sjm0240111
opened
6 years ago
16
Cannot regroup samples in ShinyAPP
#16
ddelalca
opened
6 years ago
1
cytof_cluster with Rphenograph crashes R
#15
vsmuir
closed
6 years ago
5
New Feature Request
#14
AbbyKimball
opened
6 years ago
5
Feature enhancement in Shiny App - Expression Level Plot
#13
ShrutiMarwaha
closed
6 years ago
7
Possible bug when using Phenograph with merge method = FIXED and number of events lower than fixedNum
#12
lconde-ucl
closed
6 years ago
6
All parameters are used for PhenoGraph, yielding useless clusters
#11
esimonds
closed
6 years ago
13
Error in (function ...
#10
LogIN-
closed
6 years ago
2
New computer, new error message
#9
AbbyKimball
closed
6 years ago
5
[suggestion] Include cluster ID (integer) in analyzedFCS output
#8
esimonds
closed
7 years ago
3
Update to v1.8.2
#7
MattMyint
closed
7 years ago
0
Unexpected Error: Error in value[[3L]](cond): The HEADER and the TEXT segment define different starting point (3787:3786) to read the data. Error during wrapup: cannot open the connection
#6
liyan99
opened
7 years ago
4
Version mismatches between GitHub and BioConductor
#5
esimonds
closed
7 years ago
3
[suggestion] Allow visualization of non-clustering markers
#4
esimonds
closed
7 years ago
2
Why I cannot get "library ("cytofkit")"
#3
liyan99
closed
6 years ago
1
transformation question
#2
hdeberg
opened
7 years ago
0
Installation problems
#1
mleipold
closed
7 years ago
14
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