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KalinNonchev
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gnomAD_DB
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
MIT License
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Gnomad v4 all populations
#36
SteampunkIslande
closed
5 days ago
2
Discrepancy between allele frequency column (af) and gnomad website
#35
shwivel
closed
1 month ago
2
Question about lcr and segdup
#34
sophiezhang-origin
closed
2 months ago
1
Missing rs ID and south asian allele frequency
#33
shubham1637
closed
2 months ago
1
Question about Exomes and Genomes Filters
#32
Sophieeeeeeee
closed
2 months ago
1
sqlite gnomAD v4.1
#31
KalinNonchev
closed
2 months ago
0
Python script to collect allele frequency for batch of SNPs in gnomAD database
#30
AR-Shicheng
closed
3 months ago
1
Missing variants in v4
#29
zainomarali
closed
3 months ago
2
Variant Not Found in sqlite3 file but found in gnomad4 web
#28
lbundalian
closed
4 months ago
10
Missing variant in Gnomad4 but in Gnomad3
#27
lbundalian
closed
6 months ago
5
Simultaneously upload gnomAD v4.0.0 wgs and wes file
#26
heomanism
closed
8 months ago
4
Update setup.py
#25
KalinNonchev
closed
8 months ago
0
update v4
#24
KalinNonchev
closed
8 months ago
0
Getting protein changes
#23
Michael-Bar
closed
9 months ago
1
Limited fields in the gnomAD SQLite database
#22
brettChapman
closed
10 months ago
5
Generating SQLite preprocessed files from gnomAD
#21
brettChapman
closed
10 months ago
2
Partial output when recreating database
#20
pkiehl2002
closed
1 year ago
13
can't find 'AMR' AF in gnomad_db_v3.1.2
#19
loverlyday
closed
1 year ago
4
release SQL for gnomAD v3.1.2
#18
KalinNonchev
closed
2 years ago
0
bump gnomAD v3.1.2
#17
KalinNonchev
closed
2 years ago
0
conda test CircleCI received exit code 137
#16
KalinNonchev
closed
1 year ago
4
Output from get_info_from_str
#15
ichauchcc
closed
2 years ago
3
add additional columns from the big gnomad VCF file
#14
KalinNonchev
closed
2 years ago
0
Unable to open database file with gnomAD_DB()
#13
PabloRomanjo
closed
2 years ago
2
gnomad v2.1.1 wgs+wes snp list
#12
thchen86
closed
2 years ago
1
PRAGMA journal_mode=WAL;
#11
KalinNonchev
closed
2 years ago
1
Parallel and download function
#10
KalinNonchev
closed
3 years ago
0
Load mitochondrial data
#9
bjmain
closed
2 years ago
5
intern parallel corpus
#8
KalinNonchev
closed
3 years ago
0
add method documentation
#7
KalinNonchev
closed
2 years ago
0
interval aggregation
#6
KalinNonchev
closed
2 years ago
0
query all variants and minor allele frequency for given chromosome
#5
KalinNonchev
closed
2 years ago
0
Create python-publish.yml
#4
KalinNonchev
closed
3 years ago
0
Create python-package.yml
#3
KalinNonchev
closed
3 years ago
0
new interval function
#2
KalinNonchev
closed
3 years ago
0
Add .circleci/config.yml
#1
KalinNonchev
closed
3 years ago
0