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KarchinLab
/
open-cravat
A modular annotation tool for genomic variants
MIT License
113
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27
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Hyphen in vcf file cause error.
#105
Alex-Karmazin
closed
1 year ago
2
open cravat doesn't work anymore
#104
jkobject
closed
2 years ago
2
Oncokb deletion
#220
jkobject
opened
2 years ago
5
Update to support multiple admins when using open-cravat-multiuser
#102
KirbySSmith
closed
1 year ago
0
Seemingly wrong ClinVar annotation for chr17:7676154:G->C
#101
BoPeng
closed
2 years ago
2
filtersqlite
#100
spaul-genetics
closed
7 months ago
3
Python API?
#99
haochenz96
closed
2 years ago
4
Pip installation fails on PyVCF
#98
haochenz96
closed
2 years ago
3
Structural variant vcf annotation
#97
EugeneEA
opened
2 years ago
14
EXTRA VCF INFO Annotations are empty
#96
kokyriakidis
closed
1 year ago
4
Unable to install annotators
#95
banerjeeshayantan
closed
2 years ago
2
Converter error
#94
spaul-genetics
closed
2 years ago
5
vcf converter seems to fail for some annotators
#93
jkobject
closed
1 year ago
3
separateannotation not working
#92
jkobject
closed
2 years ago
6
TSV export problem
#91
kokyriakidis
closed
2 years ago
1
Error lines
#90
anleopa
closed
1 year ago
16
Building presonalized filters
#89
anleopa
closed
2 years ago
6
refseq annotation
#88
EugeneEA
closed
6 months ago
5
ncer annotator?
#87
EugeneEA
closed
1 year ago
2
Option to cancel download options
#86
kokyriakidis
closed
2 years ago
6
Rdata report generation error
#85
kokyriakidis
closed
2 years ago
4
Converters work on binary files
#84
The-Jacob-Lopez
closed
2 years ago
1
Is it possible to install openCravat to different place other than C:/ in windows
#83
WeiMeihan
closed
2 years ago
1
bug in "Original Input" annotator
#82
EugeneEA
closed
2 years ago
13
OncoKB
#81
katelynmullen
closed
2 years ago
9
No module named 'cravat'
#80
anleopa
closed
2 years ago
1
Uniprot annotation in OC can be misleading
#79
ctokheim
opened
2 years ago
1
Variants from same position but on different strant
#76
kokyriakidis
closed
1 year ago
9
[original_input] module does not exist in the system.
#75
AshirBorah
closed
2 years ago
2
Display more than 100,000 variants
#74
kokyriakidis
closed
2 years ago
1
can 'oc report ' output an annotated VCF?
#71
jlac
closed
3 years ago
2
OpenCravat hangs on dbsnp_common
#70
duartemolha
closed
2 years ago
4
Lack of correspondence between sample names and sample info in multisample VCF annotation results
#69
EugeneEA
closed
3 years ago
10
genebass data source
#68
cariaso
closed
1 year ago
2
Discrepancies in functional classification of Indel variants when using openCRAVAT and ANNOVAR/hg19 gencode
#67
Jasonmbg
closed
3 years ago
3
Mutect2 Gatk4 VCFs not accepted
#66
mmterpstra
closed
3 years ago
9
Discrepancies in variant classification and variant effect prediction score values when using openCRAVAT and ANNOVAR
#65
Jasonmbg
closed
3 years ago
16
open-cravat octopus vs strelka
#64
cariaso
closed
1 year ago
15
Potential problem in hg19 position annotator
#63
EugeneEA
closed
3 years ago
7
provide option to download everything on the website
#62
antonkulaga
closed
2 years ago
1
cravat.exceptions.BadFormatError: All sample GT are zero
#61
antonkulaga
closed
3 years ago
1
No results in Variant Report
#60
Eduardo-Auer
closed
3 years ago
13
check that reqired annotators installed (in .yml) fails
#59
EugeneEA
closed
3 years ago
2
how to handle scaffold regions?
#58
loipf
closed
3 years ago
2
error.converter: unsupported operand type
#57
loipf
opened
3 years ago
1
missing python module 'vcf'
#56
loipf
closed
3 years ago
2
ClinGen Allele Registry ids?
#55
cariaso
closed
1 year ago
4
Error while annotating with a hg19 based VCF file
#54
kokyriakidis
opened
3 years ago
2
NoneType error when running cravat
#52
ysbioinfo
closed
3 years ago
4
Save filter and annotat vcf + sqlite
#51
volyavi
closed
1 year ago
3
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