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KarchinLab
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open-cravat
A modular annotation tool for genomic variants
MIT License
110
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27
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Error retrieving file system type on SLURM compute node
#150
nathandloria
closed
1 year ago
2
Filter by allele frequency in Filter Query Builder
#149
pmenzel
closed
1 year ago
3
some annotators from the store fail to annotate chrM variants
#148
EugeneEA
closed
6 months ago
2
Pt 184696341 repeat refresh
#147
mryaninsilico
closed
1 year ago
1
Invalid Reference Base
#146
mproberts99
closed
1 year ago
3
Connection to store.opencravat.org timed out
#145
kkmarkel
closed
1 year ago
2
UTF error when submitting multiple 23andMe files
#144
RachelKarchin
closed
1 year ago
2
feat/module dependencies full resolution
#143
skanderson
closed
1 year ago
1
WARNING: annotation
#142
lmanchon
closed
1 year ago
1
Add encoding option for CravatFile
#141
skanderson
closed
1 year ago
3
Questions re Original Cravat vs Open Cravat
#140
MarkWaltham
closed
1 year ago
2
Querry builder fails to detect data in filed [Variant annotation][Note]
#139
EugeneEA
closed
1 year ago
2
failed to convert VCF from gridss output
#138
lmanchon
opened
1 year ago
6
onkokb module failed because not in store
#137
lmanchon
closed
1 year ago
5
vcf-converter error
#136
2007lab
closed
6 months ago
1
Update get_install_deps to get child dependencies.
#135
skanderson
closed
1 year ago
0
dbscSNV annotator: wrong genome assembly coordinates
#134
emijks
closed
1 year ago
1
missing info in output file
#133
katelynmullen
closed
1 year ago
2
bug in "gnomad AD3 counts" module
#132
EugeneEA
closed
1 year ago
1
custom postaggregator
#131
emijks
closed
1 year ago
1
Not main transcript selected by default?
#130
EugeneEA
opened
1 year ago
3
add values in 'Total reads' column
#129
lmanchon
closed
1 year ago
1
Jobtopackage
#128
mryaninsilico
closed
1 year ago
0
Result viewer problems
#127
janetj1968
closed
1 year ago
4
GQ and gnomad3_counts annotator module
#126
PabloRomanjo
closed
6 months ago
1
ensembl exon number
#125
cheanney
closed
1 year ago
2
"IndexError: list index out of range" exception in run_genemapper_mp
#124
Zuulira
closed
1 year ago
2
Pass through errors in store_utils.get_file_to_string
#123
tenzinhl
closed
1 year ago
2
NCBI Gene Update
#122
kokyriakidis
closed
1 year ago
2
ModuleInfoCache.update_remote() should be elevate the contents of the HttpError rather than throwing them away
#121
tenzinhl
closed
1 year ago
5
can't read vcf Strelka2 formated
#120
lmanchon
closed
1 year ago
2
Job hung at "running gene mapper..."
#119
CypherAce
closed
1 year ago
4
Python API issue
#118
haochenz96
closed
1 year ago
3
mt genome coordinates
#117
EugeneEA
closed
1 year ago
4
Hugo Gene annotation
#116
cheanney
closed
4 months ago
1
PyVCF error
#115
DCGenomics
closed
1 year ago
4
Download module speed is too slow.
#114
Eduardo-Auer
closed
2 years ago
0
Bug: Merge SQLite fails with python/3.6
#113
skchronicles
closed
1 year ago
5
Add an environment variable to override modules directory
#112
skchronicles
closed
2 years ago
1
Added notebooks to LargeScaleAnnotation
#111
DCGenomics
closed
2 years ago
0
A test commit
#110
DCGenomics
closed
2 years ago
0
Numeric values in VCF file are not parsed properly
#109
bogdanovvp
closed
1 year ago
4
Updates to OncoKB
#108
zhx828
closed
1 year ago
1
How to use link to multiple id in one column?
#107
Alex-Karmazin
closed
1 year ago
1
Use slash n (\n) symbol in annotator return field prevents output
#106
Alex-Karmazin
closed
1 year ago
1
Hyphen in vcf file cause error.
#105
Alex-Karmazin
closed
1 year ago
2
open cravat doesn't work anymore
#104
jkobject
closed
2 years ago
2
Oncokb deletion
#220
jkobject
opened
2 years ago
5
Update to support multiple admins when using open-cravat-multiuser
#102
KirbySSmith
closed
1 year ago
0
Seemingly wrong ClinVar annotation for chr17:7676154:G->C
#101
BoPeng
closed
2 years ago
2
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