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KarchinLab
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open-cravat
A modular annotation tool for genomic variants
MIT License
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Resume annotation option
#193
tkmamidi
opened
8 months ago
2
TypeError: argument of type 'NoneType' is not iterable
#192
tkmamidi
closed
5 months ago
2
Update help link on webresult to point to read-the-docs
#191
skanderson
closed
7 months ago
0
Add link to opencravat.org on submit/store and result pages
#190
skanderson
closed
7 months ago
0
Help icon does not point to ReadThe Docs
#189
RachelKarchin
closed
7 months ago
0
Feat/submit globalfix with e2e tests
#188
skanderson
closed
8 months ago
1
sqlite3.OperationalError: database is locked
#187
ro-carvajal
closed
4 months ago
7
Annotator version for API
#186
tkmamidi
closed
8 months ago
1
S3 error: The specified bucket does not exist
#185
tkmamidi
closed
5 months ago
2
When Packages selected on the Store Tab, checkboxes for annotator types still appear.
#184
RachelKarchin
closed
5 months ago
0
Summary panel widgets not loading
#182
RachelKarchin
closed
9 months ago
1
cleaning up Pool calls
#181
Jeltje
closed
10 months ago
1
Annotations missing from output
#180
tkmamidi
closed
9 months ago
3
Gnomad 3 annotator
#179
cheanney
closed
4 months ago
1
Update all button not working
#178
RachelKarchin
opened
10 months ago
1
System update message not legible on upper right of Jobs page
#177
RachelKarchin
closed
10 months ago
2
multi-process parameter not working
#176
tkmamidi
opened
10 months ago
2
gather_machine_data function fails on WSL
#175
BnetButter
closed
3 months ago
1
aiohttp 4.0.0 issue
#174
BnetButter
closed
11 months ago
1
ALFA now has genotype frequency
#217
cariaso
opened
11 months ago
0
Modules failing to annotate
#173
tkmamidi
closed
10 months ago
2
Displaying example notebook
#172
aiqc
closed
11 months ago
1
what does Quick Save do?
#171
diekhans
closed
4 months ago
1
Default examples could be much more interesting
#170
diekhans
closed
5 months ago
1
integrate with desktop igv
#169
diekhans
closed
4 months ago
1
CRAVAT uses GENCODE/Ensembl, however IGV has refseq
#168
diekhans
closed
3 months ago
4
Variant viewer should link to UCSC Browser
#167
diekhans
closed
11 months ago
2
README links to non-existant page
#166
diekhans
closed
12 months ago
1
Can not copy from Variant Annotation table
#165
diekhans
closed
4 months ago
1
PhyloP and Phast Cons widgets show no scores (and other complains)
#164
diekhans
closed
11 months ago
3
new windows installer [2.4.0]
#163
zuber-bioinfo
closed
10 months ago
1
GWAS catalog: no output
#162
jwehr618
opened
1 year ago
2
possible incorrect handling of tRNA genes
#161
EugeneEA
opened
1 year ago
0
Not main selected by default
#160
EugeneEA
opened
1 year ago
0
bugfix admin_util.py had a bug during dependency cleanup
#159
cariaso
closed
11 months ago
1
SOURCE:error.mavedb
#218
tkmamidi
opened
1 year ago
1
Invalid module: hg38
#158
tkmamidi
closed
1 year ago
1
CADD annotator not working!
#157
tkmamidi
closed
1 year ago
1
Missing variants in the annotated VCF
#156
skoul9
opened
1 year ago
2
Install an older version of a module
#155
skoul9
closed
1 year ago
6
Import Filter from File not working
#154
RadioAndrea
closed
4 months ago
1
OC stalling on mapper
#153
katelynmullen
closed
5 months ago
1
Transcript level annotation format
#219
tkmamidi
opened
1 year ago
1
No results in variantreport webapp
#152
adeffur
closed
1 year ago
1
❗❗❗ Downtime 4/24-5/2 2023
#151
kmoad
closed
1 year ago
6
Error retrieving file system type on SLURM compute node
#150
nathandloria
closed
1 year ago
2
Filter by allele frequency in Filter Query Builder
#149
pmenzel
closed
1 year ago
3
some annotators from the store fail to annotate chrM variants
#148
EugeneEA
closed
5 months ago
2
Pt 184696341 repeat refresh
#147
mryaninsilico
closed
1 year ago
1
Invalid Reference Base
#146
mproberts99
closed
1 year ago
3
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