issues
search
Katsevich-Lab
/
sceptre
An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
https://katsevich-lab.github.io/sceptre/
GNU General Public License v3.0
26
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Return the gene precomputations when using the complement set as the control group.
#31
timothy-barry
closed
1 year ago
0
Internally store the gene expression matrix as a dense matrix if the fraction of zeros < 1/2.
#30
timothy-barry
closed
1 year ago
1
Add an option to run a standard GLM score test
#29
timothy-barry
opened
1 year ago
0
Add option to combine p-values across gRNAs targeting the same site via Bonferroni adjustment.
#28
timothy-barry
closed
1 year ago
1
Export the number of cells for each gene-guide pair
#27
redbybeing
closed
1 year ago
1
Error when running calibration check on low MOI data
#26
ale-gomez
closed
1 year ago
11
Running perturbation-to-gene association tests.rm: cannot remove '/work/appscr/r/jiseokl/Rtmpp2Fj14/logs': Directory not empty
#25
redbybeing
closed
1 year ago
13
Error in .highmoi_run_gene_precomputation_at_scale_round_1(pod_id = pod_id, : task 1 failed - "ℹ In index: 1.
#24
redbybeing
closed
1 year ago
21
Error in run_gene_precomputation_at_scale_round_2(pod_id = pod_id, gene_precomp_dir = dirs[["gene_precomp_dir"]], : task 2 failed - "cannot open the connection"
#23
ggolczer
closed
1 year ago
4
Rewrite package to avoid writing distillation offsets to disk.
#22
timothy-barry
closed
1 year ago
0
Parallel fail?
#21
LPerlaza
closed
2 years ago
5
Link to `sceptre-pipeline` on the sceptre website
#20
ekatsevi
closed
1 year ago
2
Pass command check
#19
timothy-barry
closed
1 year ago
0
Output fold change estimate
#18
timothy-barry
closed
2 years ago
0
Increase R requirement
#17
timothy-barry
closed
2 years ago
0
Add functionality to compute cis pairs
#16
timothy-barry
closed
1 year ago
0
Large-scale analysis available
#15
Ruleof6
closed
2 years ago
2
Build the `sceptre` Nextflow pipeline
#14
timothy-barry
closed
2 years ago
0
Rewrite sceptre::make_qq_plot using new QQ plotting functionality in the utilities package
#13
ekatsevi
closed
1 year ago
0
Using rbindlist instead of rbind
#12
1onic
closed
2 years ago
2
Error with regularizing gene sizes
#11
1onic
closed
2 years ago
4
Error in task1
#10
cnk113
closed
2 years ago
19
No result object created
#9
sofiedemeyer
closed
2 years ago
6
Some files are causing duplicating text issues.
#8
scarlettcanny0629
closed
3 years ago
0
Some files are causing duplicating text issues.
#7
scarlettcanny0629
closed
3 years ago
0
Add R-CMD-Check badge
#6
scarlettcanny0629
closed
3 years ago
0
run_sceptre_in_memory and run_sceptre_gRNA_gene_pair results are uncorrelated
#5
LucasSilvaFerreira
closed
3 years ago
4
Add command check badge
#4
timothy-barry
closed
2 years ago
0
Update the sceptre-at-scale vignette to include a section on running sceptre on a cluster
#3
ekatsevi
closed
2 years ago
0
Write a script like sceptre_at_scale.bash, but which works with a cluster with a scheduler.
#2
ekatsevi
closed
2 years ago
0
Test issue
#1
ekatsevi
closed
3 years ago
0
Previous