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KatyBrown
/
CIAlign
MIT License
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added option to keep sequence names in mini alignments
#68
KatyBrown
opened
1 month ago
0
Option for original sequence names in plots
#67
PeterP-GH
closed
1 month ago
1
additional stats plots and mini alignment options
#66
KatyBrown
closed
3 months ago
0
added function residueChangeCount in consensusSeq
#65
Jebthesheep101
closed
3 months ago
1
finished function for plotting residue frequencies
#64
KatyBrown
closed
4 months ago
0
Bar graph function with documentation
#63
Jebthesheep101
closed
4 months ago
0
Update consensusSeq.py
#62
Jebthesheep101
closed
4 months ago
0
updated help function plot_consensus_identity
#61
Jebthesheep101
closed
4 months ago
0
added documentation for the function in consensusSeq
#60
Jebthesheep101
closed
4 months ago
0
added the consensus alignment array and the consenseus alignment graph
#59
Jebthesheep101
closed
4 months ago
0
modules not found upon installation
#58
jonathan-wells
closed
4 months ago
3
Update README and fix markup bug
#57
schnamo
closed
6 months ago
0
Allow CIAlign to handle gunzipped fasta files.
#56
Thernn88
opened
1 year ago
0
how to get row labels labeled in output SVG image?
#55
hhg7
closed
1 year ago
1
Update conda CIAlign to latest version?
#54
bioteksampath
closed
4 months ago
1
Alignment cropping only outputs log file, but no alignment file
#53
ahaegeman
opened
1 year ago
0
Missing modules with installation
#52
dgslos
closed
4 months ago
1
alternative colours
#51
KatyBrown
opened
1 year ago
2
Remove columns with user-defined percentage missing value
#50
Phismil
opened
1 year ago
1
File naming for the output
#49
dgslos
opened
1 year ago
2
IndexError: tuple index out of range
#48
dgslos
closed
1 year ago
3
Multiple changes for release of version 1.1.0
#47
KatyBrown
closed
1 year ago
0
Crop divergent
#46
KatyBrown
closed
1 year ago
0
Retain sequences
#45
KatyBrown
closed
1 year ago
0
Bump numpy from 1.21.0 to 1.22.0
#44
dependabot[bot]
closed
4 months ago
1
More cleaning/filtration steps
#43
fanninpm
opened
2 years ago
1
Bump numpy from 1.19.5 to 1.21.0
#42
dependabot[bot]
closed
2 years ago
0
Add paper to readme.md
#41
schnamo
closed
2 years ago
0
Let the user change the '--remove_insertions' percentage
#40
lukaszsobala
closed
2 years ago
2
Ci testing
#39
KatyBrown
closed
2 years ago
1
CI testing
#38
KatyBrown
closed
2 years ago
1
Updated cmt tables
#37
schnamo
closed
2 years ago
0
QuanTest2, time and memory tables, unit test updates, minor adjustments
#36
schnamo
closed
2 years ago
0
Generating a Consensus Sequence like Geneious with Threshold
#35
bigben446
opened
3 years ago
1
temp fix for ranges
#34
schnamo
closed
3 years ago
0
Added more parameter
#33
schnamo
closed
3 years ago
0
minor edits for benchmarking and to mini alignment colours
#32
KatyBrown
closed
3 years ago
0
tiny adjustments
#31
schnamo
closed
3 years ago
0
min and max values for argument parser, moved CIAlign.py code, added numbering options for mini alignments
#30
KatyBrown
closed
3 years ago
0
parameter min and max values
#29
KatyBrown
closed
3 years ago
1
keep_gaponly?
#28
ollenordesjo
closed
3 years ago
3
merge the benchmarking branch into master
#27
KatyBrown
closed
3 years ago
0
unit tests
#26
schnamo
closed
3 years ago
0
most unit tests, adjusting removeInsertions default insertion_max_size parameter, small bug fixes
#25
schnamo
closed
3 years ago
0
first unit tests and bug fix in crop ends
#24
schnamo
closed
3 years ago
0
measure time and memory utility function
#23
schnamo
closed
3 years ago
0
CIAlign influences aligment itself
#22
dgslos
closed
3 years ago
3
Update .gitignore
#21
schnamo
closed
3 years ago
0
The sequences in your alignment are not all the same length
#20
majie5976
closed
3 years ago
2
memory usage
#19
blahah
closed
2 years ago
3
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