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KrishnaswamyLab
/
scprep
A collection of scripts and tools for loading, processing, and handling single cell data.
MIT License
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Unable to run test cases
#138
stkgo
opened
4 months ago
0
Upgrade to pandas 2.0
#137
scottgigante
closed
1 year ago
1
Bump urllib
#136
scottgigante
closed
1 year ago
2
Master
#135
scottgigante
closed
1 year ago
0
Remove py36
#134
scottgigante
closed
1 year ago
0
Clear warnings and test errors
#133
scottgigante-immunai
closed
1 year ago
1
`scprep.io.download.download_google_drive` failing due to google api changes
#132
atong01
opened
2 years ago
0
explicitly convert spmatrix
#131
scottgigante-immunai
opened
2 years ago
0
Document sign change of EMD in `scprep.stats.differential_expression`
#130
CRISTIANJULIOCESAR
closed
2 years ago
3
Bump version
#129
scottgigante-immunai
closed
2 years ago
0
Print traceback on RFunction error
#128
scottgigante-immunai
closed
2 years ago
0
scprep `install_github` tests are failing
#127
scottgigante-immunai
opened
2 years ago
0
scprep slingshot tests are failing
#126
scottgigante-immunai
opened
2 years ago
0
Fix some broken tests
#125
scottgigante-immunai
closed
2 years ago
0
Run black
#124
scottgigante-immunai
closed
2 years ago
0
Add `ignore_nan` arg to `scprep.stats.pairwise_correlation`
#123
scottgigante-immunai
closed
2 years ago
1
Explicitly return lineages from scprep.run.slingshot.Slingshot
#122
alex-claman
opened
3 years ago
0
Bugfix: Dyngen installation and Github installation tests
#121
aarthivenkat
closed
3 years ago
1
scprep v1.1.0
#120
scottgigante
closed
3 years ago
1
Feature/dyngen
#119
aarthivenkat
closed
3 years ago
4
v1.0.12.post1
#118
scottgigante
closed
3 years ago
1
Load from Loom file
#117
keenangraham
closed
1 year ago
0
scprep 1.0.12
#116
scottgigante
closed
3 years ago
0
Test deploy
#115
scottgigante
closed
3 years ago
0
scprep v1.0.11
#114
scottgigante
closed
3 years ago
1
Close #107
#113
dburkhardt
closed
3 years ago
0
scprep 1.0.10
#112
scottgigante
closed
3 years ago
1
v1.0.9
#111
scottgigante
closed
3 years ago
1
scprep v1.0.8
#110
scottgigante
closed
3 years ago
1
scprep v1.0.7
#109
scottgigante
closed
3 years ago
1
v1.0.6
#108
scottgigante
closed
3 years ago
1
MatplotlibDeprecationWarning: Passing parameters norm and vmin/vmax simultaneously is deprecated
#107
dburkhardt
closed
3 years ago
0
Density subsampling
#106
scottgigante
opened
4 years ago
1
download_google_drive doesn't notify of permissions errors
#105
scottgigante
opened
4 years ago
0
Bugfix: suppress_errors in sanitize
#104
scottgigante
closed
4 years ago
1
scprep v1.0.5
#103
scottgigante
closed
4 years ago
1
Helper function to run scanpy louvain / leiden and produce a desired number of clusters
#102
dburkhardt
opened
4 years ago
0
load_10X_zip should accept a folder inside the archive
#101
scottgigante
closed
4 years ago
0
How to re-order legends when using scprep.plot.rotate_scatter3
#100
scottgigante
opened
4 years ago
4
Error loading Jupyter notebooks
#99
jaketae
closed
4 years ago
2
scprep v1.0.4
#98
scottgigante
closed
4 years ago
1
`scprep.plot.scatter2d` doesn't handle a single point
#97
scottgigante
closed
4 years ago
0
Unable to turn off axis labels when passing dataframe to scatter2d
#96
dburkhardt
closed
4 years ago
0
`scprep.select.columns` should return a series if only one column is selected
#95
dburkhardt
closed
4 years ago
3
scprep v1.0.3
#94
scottgigante
closed
4 years ago
1
Rotate jitterplot 90 degrees
#93
scottgigante
opened
4 years ago
0
scprep v1.0.2
#92
scottgigante
closed
4 years ago
1
Fix `splatter` and `slingshot` docs URLs
#91
scottgigante
closed
4 years ago
1
scprep v1.0.1
#90
scottgigante
closed
4 years ago
2
`scprep.plot.graph()`
#89
dburkhardt
opened
4 years ago
0
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