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LCSB-BioCore
/
COBREXA.jl
Constraint-Based Reconstruction and EXascale Analysis
https://lcsb-biocore.github.io/COBREXA.jl/
Apache License 2.0
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Remove crowding (obsolete via SMOMENT)
#725
stelmo
closed
1 year ago
5
Add accessors for enzyme associated data
#724
stelmo
closed
1 year ago
6
Rename file
#723
stelmo
closed
1 year ago
1
Replace uses of `:reverse` with `:backward` to be consistent
#722
stelmo
closed
1 year ago
1
Rename reaction_gene_association to reaction_gene_associations
#721
stelmo
closed
1 year ago
1
Rename SMomentModel to SimplifiedEnzymeConstrainedModel
#720
stelmo
closed
1 year ago
3
Rename GeckoModel to EnzymeConstrainedModel
#719
stelmo
closed
1 year ago
3
Delete reaction overloads
#718
stelmo
closed
1 year ago
3
Implement a variant of Constrained Allocation Flux Balance Analysis
#717
stelmo
closed
1 year ago
13
Add convenience macro that loads all the functions in modules
#716
stelmo
closed
1 year ago
7
further vastly simplify the printing of metabolic models and their contents
#713
exaexa
closed
1 year ago
2
Fix a small bug + add 2 convenience functions
#712
stelmo
closed
1 year ago
3
Incorrect gene reaction rule parsing
#711
stelmo
closed
1 year ago
7
huge rename of variable-ish things
#710
exaexa
closed
1 year ago
1
Conversion from MATModel produces opaque errors if fields are missing
#709
htpusa
opened
1 year ago
3
Develop → master merge for 1.4.3
#708
exaexa
closed
1 year ago
1
bump hotfix release 1.4.3
#707
exaexa
closed
1 year ago
0
freeze SBML dictionary ordering
#706
exaexa
closed
1 year ago
2
upgrade julia version on ci and set mac path
#705
laurentheirendt
closed
1 year ago
1
Develop → master merge for v1.4.2
#704
exaexa
closed
1 year ago
1
Release 1.4.2
#703
exaexa
closed
1 year ago
0
use the latest recommended Julia CI on master+develop for generating …
#702
exaexa
closed
1 year ago
1
use a softer failure when unit annotations are missing in SBML
#701
exaexa
closed
1 year ago
3
Change the interface to the optimizer
#700
stelmo
closed
1 year ago
1
Turn MMDF analysis into a wrapper
#699
stelmo
closed
1 year ago
5
Compress model pretty print
#698
stelmo
closed
1 year ago
5
Remove `@add_reactions`
#697
stelmo
closed
1 year ago
5
Extend community model
#696
stelmo
closed
1 year ago
7
Add accessor to get model IDs
#695
stelmo
closed
1 year ago
1
Rename reconstruction to construction
#694
stelmo
closed
1 year ago
2
sync julia version with artenolis
#693
exaexa
closed
1 year ago
1
fix loading of matlab version of yeast GEM
#692
exaexa
closed
1 year ago
1
.mat model not loading
#691
HettieC
closed
1 year ago
6
Indent submodule definitions
#690
exaexa
closed
1 year ago
0
Update gene associations
#689
stelmo
closed
1 year ago
13
Add `ext` option
#688
josePereiro
closed
1 year ago
5
Rename `MetabolicModel` to `AbstractMetabolicModel`
#687
stelmo
closed
1 year ago
1
Delete moment algorithm modification
#686
stelmo
closed
1 year ago
1
Collect package download information
#685
stelmo
closed
10 months ago
5
Parse common attributes from notes
#684
htpusa
opened
2 years ago
3
backmerge `master` changes to `develop` to resolve merge conflicts
#683
exaexa
closed
2 years ago
0
Develop → master merge for v1.4.1
#682
exaexa
closed
2 years ago
1
remove `polish` parameter specific to osqp
#681
exaexa
closed
2 years ago
2
switch tests julia from 1.7 to 1.8
#680
exaexa
closed
1 year ago
2
fix docbuild: JuMP `MIN_SENSE` and `MAX_SENSE` disappeared
#679
exaexa
closed
2 years ago
0
tINIT algorithm
#678
mihai-sysbio
opened
2 years ago
7
docs: reflect the solver change in Project.toml
#677
exaexa
closed
2 years ago
0
Make the SBML annotations work just like with JSON models
#676
exaexa
closed
2 years ago
1
CompatHelper: bump compat for SBML to 1, (keep existing compat)
#675
github-actions[bot]
closed
1 year ago
3
Use smaller organized namespaces.
#674
exaexa
closed
1 year ago
5
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