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LCSB-BioCore
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COBREXA.jl
Constraint-Based Reconstruction and EXascale Analysis
http://bit.ly/COBREXA
Apache License 2.0
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finalize the semantics
#775
exaexa
closed
10 months ago
2
Fix EqualGrowthCommunityModel accessors
#774
stelmo
closed
1 year ago
0
implement wrappy pFBA using the normal L2 wrappers
#773
exaexa
closed
1 year ago
3
Extend simplified enzyme model to include multiple capacity constraints
#772
stelmo
closed
1 year ago
16
Rename GeneAssociation file
#771
stelmo
closed
1 year ago
1
Make kwarg plural
#770
stelmo
closed
1 year ago
1
unify L2-like QP handling
#769
exaexa
closed
1 year ago
0
`removeReaction!` etc. doesn't update all fields in a `CoreModel`
#768
htpusa
opened
1 year ago
1
split wrappers off to a separate module
#767
exaexa
closed
1 year ago
1
Add basic show for ModelWithResult
#766
stelmo
closed
1 year ago
1
Mapping through delimited IDs into inner models
#765
stelmo
closed
2 months ago
2
Fix cFBA implementation
#764
stelmo
closed
1 year ago
5
Result wrapper
#763
exaexa
closed
1 year ago
1
Fix and extend reconstruction functions and pipes for objectmodel
#762
stelmo
closed
1 year ago
11
Add `Result` type
#761
stelmo
closed
1 year ago
2
Add plural to change_bounds and add change_constraints
#760
stelmo
closed
1 year ago
1
Make kwargs for convenience enzyme constrained consistent
#759
stelmo
closed
1 year ago
9
JSON model format incompatible with escher
#758
HettieC
closed
1 year ago
8
Return enzyme concentrations in useful units
#757
stelmo
closed
1 year ago
2
Export MIN_SENSE and MAX_SENSE
#756
stelmo
closed
1 year ago
2
Fix model accessor bugs
#755
stelmo
closed
1 year ago
1
Remove unnecessary docstrings
#754
stelmo
closed
1 year ago
3
remove and clean up GeneAssociations alias
#753
exaexa
closed
1 year ago
1
port GRR parsing to 2.0, avoid DNF complexity explosions
#752
exaexa
closed
1 year ago
1
Add pipes to all the analysis functions
#751
stelmo
closed
1 year ago
4
Add model annotation details
#750
stelmo
closed
1 year ago
10
Add another convenience constructor for enzyme constrained models
#749
stelmo
closed
1 year ago
1
Add test for multiple capacity enzyme bounds
#748
stelmo
closed
1 year ago
1
pFBA pipe
#747
stelmo
closed
1 year ago
8
Homogenize bound kwargs
#746
stelmo
closed
1 year ago
1
Generalize loopless modification
#745
stelmo
closed
7 months ago
5
clean up SBML unit-error throwing
#744
exaexa
closed
1 year ago
1
Add balance accessor to community model
#743
stelmo
closed
1 year ago
3
Add some more semantics to EnzymeConstrainedModel
#742
stelmo
closed
1 year ago
15
Remove double s from enzyme semantics
#741
stelmo
closed
1 year ago
1
Remove switching argument for reaction constructors
#740
stelmo
closed
1 year ago
3
Add more reconstruction functions to ObjectModel
#739
stelmo
closed
1 year ago
3
Develop → master merge for 1.4.4
#738
exaexa
closed
1 year ago
2
version bump for 1.4.4
#737
exaexa
closed
1 year ago
0
Q-opt support
#736
exaexa
closed
1 year ago
1
extensible variable semantics
#735
exaexa
closed
1 year ago
2
fix GRA compat once more (and hopefully the last time)
#734
exaexa
closed
1 year ago
1
GPA ordering fix
#733
exaexa
closed
1 year ago
1
Fix test bugs in new parser
#732
stelmo
closed
1 year ago
3
add an actual GPA/GRR to DNF parser
#731
exaexa
closed
1 year ago
1
remove a config from local CI
#730
exaexa
closed
1 year ago
1
CompatHelper: bump compat for SBML to 1, (keep existing compat)
#729
github-actions[bot]
closed
1 year ago
1
`LICENSE` file type was not markdown
#728
exaexa
closed
1 year ago
1
remove obsolete print_banner() from the SIF container
#727
exaexa
closed
1 year ago
1
Generalize metabolites
#726
stelmo
closed
1 year ago
3
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