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RNA Contamination Detector

rna_cd is a python package and command line tool designed to detect RNA contamination of DNA-seq experiments.

For our complete documentation, please checkout our readthedocs page <https://rna-cd.readthedocs.io/en/latest/>_.

Requirements

• Python 3.5+
• click
• scikit-learn
• pysam
• matplotlib

Installation

PyPI

::

$ pip install rna-cd

Conda

:: $ conda install -c bioconda rna-cd

License

AGPLv3+