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LeonardSchmiester
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Benchmark-Models
This repository is not maintained anymore. Please use: https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab
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obsevableId in Raia shadows model id
#108
fbergmann
closed
4 years ago
2
measurement data in Schwen_PONE2014
#107
fbergmann
opened
4 years ago
3
Borghans: update simulatedData format and to linear scale
#106
yannikschaelte
closed
4 years ago
0
Adjust simulatedData files to new format
#105
yannikschaelte
closed
4 years ago
2
fix observable_ for Schwen
#104
yannikschaelte
closed
4 years ago
1
duplicated id in `Crauste_CellSystems2017`
#103
fbergmann
closed
4 years ago
0
observable file in Bachmann lists observableId multiple times
#101
fbergmann
closed
4 years ago
0
further fixes regarding introduction of unique observable ids
#100
yannikschaelte
closed
4 years ago
0
add observable_ to measurement files
#99
yannikschaelte
closed
4 years ago
0
Fix observableIds shadowing species IDs
#98
dweindl
closed
4 years ago
2
conflict introduced in bachmann observable table
#97
fbergmann
closed
4 years ago
1
issue with measurement data in Bruno_JExpBio2016
#95
fbergmann
closed
4 years ago
5
Add script to update benchmark collection to observable table format
#88
dweindl
closed
4 years ago
2
Update PEtab parameter files to prior specification
#87
yannikschaelte
closed
4 years ago
0
Update PEtab yaml files to include visualization files
#86
dweindl
closed
4 years ago
1
Schwen_PONE2014 measurements are in log scale, but should be lin
#85
dweindl
closed
4 years ago
2
Generate PEtab yaml files for https://github.com/ICB-DCM/PEtab/pull/183
#84
dweindl
closed
4 years ago
0
Change parameter and simulated data values to LINEAR scale
#81
elbaraim
closed
4 years ago
0
observableTransformation of Measurement data for Becker, Borghans & Blasi case #145
#80
dweindl
closed
4 years ago
0
- issue #24: correct measurement data
#79
fbergmann
closed
4 years ago
0
- fix the sbml using cn's rather than ci's
#78
fbergmann
closed
4 years ago
2
- issue #7: fix the experimental condition
#77
fbergmann
closed
4 years ago
0
TravisCI not triggered on commit
#76
dweindl
opened
4 years ago
1
Add link to publication to e.g. SBMLmodel
#74
LeonardSchmiester
closed
4 years ago
2
Where to host benchmark repository?
#73
LeonardSchmiester
closed
4 years ago
5
Additional model: Alkan_DDRP_SciSignal2018
#72
erikadudki
closed
4 years ago
5
Additional model: Perelson, Science 1996
#67
erikadudki
closed
4 years ago
2
Visualization
#66
erikadudki
closed
5 years ago
4
Add visualization routine for Isensee_JCB2018, related to issue in Petab/AddVisualizationRoutine
#65
erikadudki
closed
5 years ago
1
Add travis config to run PEtab validator, fix script
#64
dweindl
closed
5 years ago
1
Remove old files from benchmark repo and history
#63
yannikschaelte
closed
4 years ago
2
Use petab validator and restrict access to main branch
#62
yannikschaelte
opened
5 years ago
2
Feature llh
#58
yannikschaelte
closed
5 years ago
0
set all model ids correctly, leave names if they are meaningful
#56
yannikschaelte
closed
5 years ago
0
Set model ids
#55
yannikschaelte
closed
5 years ago
1
PEtab status of current models
#53
dweindl
closed
5 years ago
2
The current xml file in Hass is not a valide SBML model according to http://sbml.org/Facilities/Validator
#49
JanHasenauer
closed
5 years ago
0
Model features to consider for setting up pypesto import
#47
dweindl
closed
5 years ago
3
Have consistent file names for all benchmark models
#46
dweindl
closed
5 years ago
1
Isensee_JCB2018: fiveHT_level in condition table but does not exist in model
#45
dweindl
closed
5 years ago
2
Remove strange species (s1, ...) added by CellDesigner
#44
JanHasenauer
closed
5 years ago
0
Support of multiple models
#43
LoosC
closed
5 years ago
0
naming in parameter sheet for zheng
#42
LoosC
closed
5 years ago
1
change column estimated -> estimate
#41
LoosC
closed
5 years ago
2
Data format validator
#40
dweindl
closed
5 years ago
1
Document data format
#39
dweindl
closed
5 years ago
2
Likelihood vs loglikelihood in model description
#38
dweindl
closed
5 years ago
1
Rounded parameter values in parameters_*.tsv
#37
dweindl
closed
5 years ago
2
Noise parameter documentation
#36
yannikschaelte
closed
5 years ago
4
new format for Hass
#35
LoosC
closed
5 years ago
4
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