LeonardSchmiester Benchmark-Models issues

LeonardSchmiester / Benchmark-Models

This repository is not maintained anymore. Please use: https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab

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obsevableId in Raia shadows model id

#108 fbergmann closed 4 years ago
2
measurement data in Schwen_PONE2014

#107 fbergmann opened 4 years ago
3
Borghans: update simulatedData format and to linear scale

#106 yannikschaelte closed 4 years ago
0
Adjust simulatedData files to new format

#105 yannikschaelte closed 4 years ago
2
fix observable_ for Schwen

#104 yannikschaelte closed 4 years ago
1
duplicated id in `Crauste_CellSystems2017`

#103 fbergmann closed 4 years ago
0
observable file in Bachmann lists observableId multiple times

#101 fbergmann closed 4 years ago
0
further fixes regarding introduction of unique observable ids

#100 yannikschaelte closed 4 years ago
0
add observable_ to measurement files

#99 yannikschaelte closed 4 years ago
0
Fix observableIds shadowing species IDs

#98 dweindl closed 4 years ago
2
conflict introduced in bachmann observable table

#97 fbergmann closed 4 years ago
1
issue with measurement data in Bruno_JExpBio2016

#95 fbergmann closed 4 years ago
5
Add script to update benchmark collection to observable table format

#88 dweindl closed 4 years ago
2
Update PEtab parameter files to prior specification

#87 yannikschaelte closed 4 years ago
0
Update PEtab yaml files to include visualization files

#86 dweindl closed 4 years ago
1
Schwen_PONE2014 measurements are in log scale, but should be lin

#85 dweindl closed 4 years ago
2
Generate PEtab yaml files for https://github.com/ICB-DCM/PEtab/pull/183

#84 dweindl closed 4 years ago
0
Change parameter and simulated data values to LINEAR scale

#81 elbaraim closed 4 years ago
0
observableTransformation of Measurement data for Becker, Borghans & Blasi case #145

#80 dweindl closed 4 years ago
0
- issue #24: correct measurement data

#79 fbergmann closed 4 years ago
0
- fix the sbml using cn's rather than ci's

#78 fbergmann closed 4 years ago
2
- issue #7: fix the experimental condition

#77 fbergmann closed 4 years ago
0
TravisCI not triggered on commit

#76 dweindl opened 4 years ago
1
Add link to publication to e.g. SBMLmodel

#74 LeonardSchmiester closed 4 years ago
2
Where to host benchmark repository?

#73 LeonardSchmiester closed 4 years ago
5
Additional model: Alkan_DDRP_SciSignal2018

#72 erikadudki closed 4 years ago
5
Additional model: Perelson, Science 1996

#67 erikadudki closed 4 years ago
2
Visualization

#66 erikadudki closed 5 years ago
4
Add visualization routine for Isensee_JCB2018, related to issue in Petab/AddVisualizationRoutine

#65 erikadudki closed 5 years ago
1
Add travis config to run PEtab validator, fix script

#64 dweindl closed 5 years ago
1
Remove old files from benchmark repo and history

#63 yannikschaelte closed 4 years ago
2
Use petab validator and restrict access to main branch

#62 yannikschaelte opened 5 years ago
2
Feature llh

#58 yannikschaelte closed 5 years ago
0
set all model ids correctly, leave names if they are meaningful

#56 yannikschaelte closed 5 years ago
0
Set model ids

#55 yannikschaelte closed 5 years ago
1
PEtab status of current models

#53 dweindl closed 5 years ago
2
The current xml file in Hass is not a valide SBML model according to http://sbml.org/Facilities/Validator

#49 JanHasenauer closed 5 years ago
0
Model features to consider for setting up pypesto import

#47 dweindl closed 5 years ago
3
Have consistent file names for all benchmark models

#46 dweindl closed 5 years ago
1
Isensee_JCB2018: fiveHT_level in condition table but does not exist in model

#45 dweindl closed 5 years ago
2
Remove strange species (s1, ...) added by CellDesigner

#44 JanHasenauer closed 5 years ago
0
Support of multiple models

#43 LoosC closed 5 years ago
0
naming in parameter sheet for zheng

#42 LoosC closed 5 years ago
1
change column estimated -> estimate

#41 LoosC closed 5 years ago
2
Data format validator

#40 dweindl closed 5 years ago
1
Document data format

#39 dweindl closed 5 years ago
2
Likelihood vs loglikelihood in model description

#38 dweindl closed 5 years ago
1
Rounded parameter values in parameters_*.tsv

#37 dweindl closed 5 years ago
2
Noise parameter documentation

#36 yannikschaelte closed 5 years ago
4
new format for Hass

#35 LoosC closed 5 years ago
4