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LieberInstitute
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brainseq_phase2
BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
http://eqtl.brainseq.org/
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Issue with HIPPO weights
#34
SalimMegat
closed
3 years ago
2
LD set in hg38 ?
#33
SalimMegat
closed
4 years ago
8
phenotype data
#32
xiangboyulan
closed
4 years ago
4
The snp allele information in the file called 'Genome wide significant eQTL snp-feature pairs'
#31
Lee211
closed
4 years ago
2
BSP2 files in /dcl01/lieber and /dcl01/ajaffe
#30
lcolladotor
closed
5 years ago
1
Check DLPFC and HIPPO correlation
#29
lcolladotor
closed
5 years ago
1
Add enrichKEGG results
#28
lcolladotor
closed
6 years ago
1
Summary of feedback from BOG, SOBP and SAGES
#27
lcolladotor
closed
5 years ago
2
May update
#26
lcolladotor
closed
6 years ago
0
devel: hippo only
#25
lcolladotor
closed
5 years ago
1
case-control: region interaction
#24
lcolladotor
closed
5 years ago
0
case-control: explore exon, jxn, tx results
#23
lcolladotor
closed
6 years ago
1
check eQTL inference using a mixed model
#22
lcolladotor
closed
5 years ago
1
raggr PCG2 risk SNPs eQTL analysis
#21
lcolladotor
closed
5 years ago
3
case-control gene ontology analysis
#20
lcolladotor
closed
6 years ago
1
case-control: exons, jxn, tx
#19
lcolladotor
closed
6 years ago
0
Run GTEx hippo eQTL code
#18
lcolladotor
closed
5 years ago
2
re-run reg-specific model
#17
lcolladotor
closed
6 years ago
0
Re-run dev model
#16
lcolladotor
closed
6 years ago
0
Filter GTEx to SNPs observed in BrainSeq phase 2
#15
lcolladotor
closed
5 years ago
1
Check with Amy prenatal sample with age close to 0
#14
lcolladotor
closed
6 years ago
0
GTEx hippo: process data
#13
lcolladotor
closed
6 years ago
3
Development model: make figure
#12
lcolladotor
closed
6 years ago
1
Region-specific model: make figure
#11
lcolladotor
closed
6 years ago
1
Prepare data for the eQTL browser
#10
lcolladotor
closed
5 years ago
1
Run WGCNA with multi-region qSVs
#9
lcolladotor
closed
5 years ago
2
Development model: run GO analysis
#8
lcolladotor
closed
6 years ago
0
Region-specific model
#7
lcolladotor
closed
6 years ago
0
Region-specific model: run GO analysis
#6
lcolladotor
closed
6 years ago
0
Region-specific model: make volcano plots
#5
lcolladotor
closed
6 years ago
0
Find sample sizes for the region-specific analyses
#4
lcolladotor
closed
6 years ago
2
Compute cell type predictions
#3
lcolladotor
closed
5 years ago
1
Check replication in development
#2
lcolladotor
closed
6 years ago
0
Check replication for the region specific analysis using only sign, not p-value.
#1
lcolladotor
closed
6 years ago
0