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MBoemo
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DNAscent
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
https://www.boemogroup.org/
GNU General Public License v3.0
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DNAscent: src/event_handling.cpp:547: void normaliseEvents(DNAscent::read&, bool): Assertion `et.n > 0' failed.
#76
ZHOUXY-QH99
opened
1 week ago
16
An error with compilation
#75
hasindu2008
closed
2 weeks ago
3
Does DNAscent handle supplementary alignments the same as primary alignments?
#74
ywang285
closed
1 week ago
1
BrdU/EdU calling in highly methylated environments
#73
JuandeBarba
closed
2 weeks ago
2
forkSense Segmentation fault
#72
rstraver
closed
1 week ago
4
Fail to open pod5 files for indexing, version 4.0.3
#71
musikutiv
closed
1 month ago
3
Three warnings when downloading singularity image
#70
KunFang93
closed
1 month ago
1
Very low percent of reads have predominant BrdU probability > 0.5
#69
ywang285
closed
1 month ago
7
Tensorflow issue when running DNAscent Detect with GPU tag
#68
ShephC
closed
2 months ago
3
DNAscent 4.0.3: both the singularity image and compiled binary are crashing on Ubuntu 22.04 system
#67
ucsc-eshell
closed
1 month ago
14
Installation issue with arrow error and termination
#66
santoshbiowarrior333
closed
2 months ago
0
Make error: missing library
#65
ShephC
closed
2 months ago
1
"Model configuration failed." and DNAscent detect analysis speed on GPU
#64
ywang285
closed
2 months ago
1
No EdU/BrdU incorporation detected in positive samples [100% "failed" detect and forksense and all "0"s in output file]
#63
PRiano-bio
closed
2 months ago
2
DNAscent: src/event_handling.cpp:547: void normaliseEvents(DNAscent::read&, bool): Assertion `et.n > 0' failed.
#62
ywang285
closed
2 months ago
8
validation data
#61
Joshmoss11
closed
2 months ago
1
DNAscent detect error: terminate called after throwing an instance of 'NegativeLog'
#60
kdong2395
closed
2 months ago
7
DNAscent detect not providing output
#59
PRiano-bio
closed
3 months ago
3
question about format of future modBAM outputs
#58
sathish-t
closed
3 months ago
6
--legacy not working
#57
ywang285
closed
3 months ago
4
RNAscent tool development?
#56
MaestSi
closed
4 months ago
1
Error DNAscent detect
#55
santoshbiowarrior333
closed
5 months ago
7
"Index should specify whether fast5 is bulk or individual"
#54
dkastl1
closed
5 months ago
0
Assertion `querySpan >= 0' failed
#53
sathish-t
closed
6 months ago
1
Supplementary alignments
#52
mcjmigdal
closed
6 months ago
3
DNAscent v4 GPU installation
#51
kmlhpk
closed
3 months ago
9
[Discussion] DNAscent as Conda Package and Hosting
#50
ThDef
closed
3 months ago
4
DNAscent index terminates prematurely on sequencing summary file from P2 Solo
#49
TeriCheng
closed
7 months ago
6
DNAscent detect - Importing reference aborted
#48
ThDef
closed
7 months ago
5
Dorado pod5 version
#47
amireden
closed
7 months ago
1
Can't install 4.0.1 on M-chip MacBook
#46
hukai916
closed
8 months ago
11
Conversion into .bed file
#45
OsredekIvana
closed
8 months ago
4
Slow speeds on GPUs with DNAscent detect on v4.0.1
#44
MBoemo
closed
3 months ago
2
Update trainGMM.cpp
#43
shutongye
closed
8 months ago
0
edit forkSense documentation
#42
Pfuderer
closed
8 months ago
0
Fix negative scale
#41
sergpolly
closed
8 months ago
1
Running on a Nvidia A100 GPU
#40
johnire80
closed
12 months ago
2
Adapt DNAscent to POD5 new default on MinKNOW?
#39
GeoMicroSoares
closed
1 year ago
1
fast5 files not recognized
#38
MRMacArthur
closed
1 year ago
4
run DNAscent at read-level?
#37
GeoMicroSoares
closed
1 year ago
4
BrDU detection on R10.4.1 400bps run
#36
Mathias-Boulanger
closed
1 year ago
2
DNAscent detect error: Assertion `scaledEvent > 0.0' failed
#35
ShuangqiWang
closed
1 year ago
8
forkSense output all 0s for EdU/BrdU
#34
ddubocan
closed
8 months ago
3
collect2: error: ld returned 1 exit status
#33
dariober
closed
1 year ago
1
DNAsent index error "Could not open file"
#32
altemose
closed
1 year ago
6
DNAscent v3 with BrdU only
#31
dariober
closed
1 year ago
1
Recursively search for fast5 file
#30
DidiCi
closed
1 year ago
1
index output is empty and detect fails
#29
ClaireMarchal
closed
2 years ago
3
DNAscent detect issue - failed reads
#28
MiHern
closed
2 years ago
6
BrdU metrics for output of forkSense
#27
dariober
closed
2 years ago
1
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