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Magdoll
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SQANTI2
SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
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error using GFF or converted GTF
#71
noor-albader
opened
3 years ago
1
Recurring perl errors - gmst.pl
#70
anilkanthi
closed
3 years ago
7
Gene_IDs in GTFs
#69
moschmi
closed
4 years ago
3
issue with python=3.7
#68
adeslatt
closed
3 years ago
0
sqanti_filter.py
#67
moschmi
closed
4 years ago
4
Error with sqanti_qc2.py command
#66
tfiskur
closed
4 years ago
4
FileNotFoundError: missing refAnnotation_***.genePred file?
#65
rebailey
closed
4 years ago
3
_corrected.gtf file without transcript line
#64
yemao701
opened
4 years ago
4
Problem running with cage_peak
#63
PJ-Shaw
closed
4 years ago
2
About adapting SQANTI2 to process transcripts from nanopore cDNA sequencing
#62
yjx1217
closed
4 years ago
2
python 3.7 bx-python error
#61
mmarchin
closed
4 years ago
1
How to utilize sqanti2 classification result for genome optimizaion?
#60
leosfan
opened
4 years ago
1
Isoform class transcript distribution versus rarefaction curve
#59
pcarbone
closed
4 years ago
1
sqanti2_qc.py fails with assertion error
#58
vkkodali
closed
4 years ago
6
Tamma Collapse for 5' cap selected samples
#57
BeatrizdeToledo
opened
4 years ago
1
Possible error from input gff files instead of fasta/fastq/gtf files
#56
leosfan
closed
4 years ago
10
gene_id annotation
#55
morellr
closed
4 years ago
2
Assertion Error
#54
HegedusB
closed
4 years ago
7
isoform map to scaffold which without reference gene
#53
shenli-js
opened
4 years ago
1
input isoforms.fasta for chain_samples.py
#52
pcarbone
closed
4 years ago
4
Error during Isoform Classification
#51
aarzalluz
closed
4 years ago
4
python: can't open file 'sqanti_qc2.py': [Errno 2] No such file or directory
#50
laguda-1996
closed
4 years ago
2
Existing files from "incomplete" runs cause errors on subsequent runs
#49
wolfgangrumpf
closed
4 years ago
1
SQANTI qc is very slow
#48
gmstanle
closed
4 years ago
2
[v5.1.0] Error: invalid feature coordinates (end<start!)
#47
yejilee-biostat
closed
4 years ago
4
Half of the HQ isoforms are classified as antisense and NIC
#46
qoiopipq
closed
4 years ago
7
error in --is_fusion
#45
prometheusloong
closed
4 years ago
3
How to generate a short read expression file?
#44
qoiopipq
closed
4 years ago
1
python2 and python3 hybird ?
#43
EXGDT
closed
4 years ago
1
SQANTI2 fails at ORF finding
#42
wolfgangrumpf
closed
4 years ago
11
More specific instructions installing cDNA_cupcake
#41
astrophys
closed
4 years ago
1
sqanti_filter2.py is not working
#40
tay45
closed
4 years ago
2
for duplicated read names -> having "dup" on gtf output, but not on SAM/FASTA output
#39
yejilee-biostat
opened
4 years ago
11
Support SAM/BAM input for SQANTI2
#38
Magdoll
opened
4 years ago
0
Could I use BAM as input rather than FASTQ?
#37
juheon
closed
4 years ago
1
AssertionError on sqanti_qc2.py v4.0 and cDNA_Cupcake v8.5
#36
huyuem
closed
4 years ago
5
Error in sqanti_qc2.py
#35
psur9757
opened
4 years ago
12
A question about "associated_gene" from _classification.txt
#34
yejilee-biostat
closed
4 years ago
2
Adding a version check.
#33
mhsieh
closed
4 years ago
0
Error when running SQANTI2
#32
Treywea
closed
5 years ago
2
will SQANTI2 works on custom fasta file?
#31
LuyiTian
closed
5 years ago
3
subprocess.CalledProcessError in PERL
#30
yzhang88
opened
5 years ago
3
Possibility for Nanopore data
#29
josiegleeson
closed
5 years ago
1
some Questions about the results
#28
shangguandong1996
closed
5 years ago
1
subprocess.CalledProcessError
#27
tay45
closed
5 years ago
11
Caution: long input filenames create unrelated error messages
#26
markb729
closed
5 years ago
3
AttributeError running squanti2
#25
qoiopipq
closed
5 years ago
2
KeyError in sqanti_qc2.py version 3.5
#24
defendant602
closed
4 years ago
7
AssertionError on v3.3
#23
defendant602
closed
5 years ago
1
TypeError on v3.2
#22
kiekyon
closed
5 years ago
2
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