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MannLabs
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alphabase
Infrastructure of AlphaX ecosystem
https://alphabase.readthedocs.io
Apache License 2.0
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9
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rename diann spec_idx to diann_spec_idx
#142
jalew188
closed
8 months ago
4
updated fragment naming convention
#141
GeorgWa
closed
8 months ago
0
feat: remove unused frag_dfs from lib when appending
#140
mo-sameh
closed
8 months ago
0
FIX Sage reader bug
#139
GeorgWa
closed
8 months ago
2
SpecLlibFlat to specLibBase conversion
#138
mo-sameh
closed
8 months ago
2
FEAT sage reader
#137
GeorgWa
closed
8 months ago
1
Add option to specify own config file
#136
ammarcsj
closed
8 months ago
6
Development
#135
jalew188
closed
9 months ago
0
FIX bugfix in fixed mods
#134
GeorgWa
closed
9 months ago
0
feat: optimized specLib flattening
#133
mo-sameh
closed
9 months ago
0
Optimize spec lib flattening
#132
mo-sameh
closed
10 months ago
1
Handling of non amino-acid FASTA characters
#131
GeorgWa
closed
10 months ago
3
Development
#130
jalew188
closed
10 months ago
2
feat: optimized flatten_fragments fn
#129
mo-sameh
closed
10 months ago
5
Bump version: 1.1.2 → 1.2.0
#128
jalew188
closed
10 months ago
0
FIX https://github.com/MannLabs/alphapeptdeep/issues/119; FIX adding fix mods
#127
jalew188
closed
10 months ago
1
Release 1.1.2
#126
GeorgWa
closed
11 months ago
1
CHORE updated class diagram
#125
GeorgWa
closed
11 months ago
0
Add msfragger quantconfig
#124
ammarcsj
closed
11 months ago
1
Use multiprocessing for decoy generation
#123
GeorgWa
closed
11 months ago
1
Using `calc_precursor_isotope_intensity()` instead of `calc_precursor_isotope()` for default isotope processing
#122
jalew188
closed
10 months ago
0
FIX #120 tracing mono in calc_precursor_isotope_intensity()
#121
jalew188
closed
11 months ago
1
Adjust isotope distribution if first isotope isn't the monoisotopic intensity
#120
GeorgWa
closed
11 months ago
2
Use multiprocessing for decoy generation
#119
GeorgWa
closed
11 months ago
1
Allow Fixed Terminal Modifications
#118
GeorgWa
closed
10 months ago
1
Release v1.1.1
#117
GeorgWa
closed
1 year ago
1
Prepare release
#116
GeorgWa
closed
1 year ago
1
Handle mod translation failure gracefully
#115
GeorgWa
closed
1 year ago
1
include mac OS M1 runner
#114
GeorgWa
closed
1 year ago
0
Updated modification handling
#113
GeorgWa
closed
1 year ago
1
annotate precursor df with FASTA
#112
GeorgWa
closed
1 year ago
2
Development
#110
jalew188
closed
1 year ago
1
Quant table reader
#109
ammarcsj
closed
1 year ago
1
resolve unexpected behaviour
#108
GeorgWa
closed
1 year ago
0
Development
#107
GeorgWa
closed
1 year ago
1
Increase layout width for better display of long names
#106
GeorgWa
closed
1 year ago
0
Quant table reader
#105
ammarcsj
closed
1 year ago
1
Calculate isotope intensity distribution using multiprocessing
#104
GeorgWa
closed
1 year ago
1
Handle two columns with same name in dataframe validation
#103
GeorgWa
closed
1 year ago
2
count and filter by frag count, close #93
#102
GeorgWa
closed
1 year ago
1
Validation of pandas dataframes close #96
#101
GeorgWa
closed
1 year ago
1
New dtype
#100
jalew188
closed
1 year ago
2
add possibility to redefine path where tempmmap arrays are saved
#99
sophiamaedler
closed
1 year ago
1
Costumizing mz/intensity dtypes
#98
jalew188
closed
1 year ago
0
Include testcase for unexpected modifications in the library reader
#97
GeorgWa
closed
1 year ago
0
Include dataframe validation schema
#96
GeorgWa
closed
1 year ago
0
Update isotope calculation
#95
GeorgWa
closed
1 year ago
0
SpecLib function to filter fragments by number of allowed fragments
#94
GeorgWa
closed
1 year ago
1
SpecLib function to count number of fragments per precursor
#93
GeorgWa
closed
1 year ago
0
calc_precursor_mz leads to unexpected behavior
#92
GeorgWa
closed
1 year ago
2
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