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MannLabs
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alphapeptdeep
Deep learning framework for proteomics
Apache License 2.0
102
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20
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peptdeep 1.2.1 not compatible with numpy 2.0.1
#190
xgwang-uw
opened
4 days ago
0
The One-Click GUI doesn't work on my CPU
#189
SSProtya
opened
6 days ago
0
183 tutorial immunopeptidomics
#188
jalew188
opened
1 week ago
1
Tutorial: speclib
#187
jalew188
opened
1 week ago
0
#185 transfer GUI only supports best supported psm_readers
#186
jalew188
opened
1 week ago
0
A problem about the GUI page
#185
jalew188
opened
1 week ago
0
Apply ruff formatting
#182
mschwoer
closed
3 weeks ago
0
#179 ADD HLA module
#181
jalew188
closed
3 weeks ago
1
replace space with _ in NC-term PTMs
#180
jalew188
opened
1 month ago
1
MOVE peptdeep_hla back
#179
jalew188
closed
2 weeks ago
0
Tutorial: immunopeptidomics
#183
jalew188
opened
1 month ago
0
Copy transformer code from huggingface due to too many breaking changes
#178
jalew188
opened
1 month ago
0
peptdeep bug on linux - destination is read-only
#177
timheymann
opened
1 month ago
0
Error while trying to create library
#176
nurudeen95
closed
2 weeks ago
3
FIX use lumos model for Astral
#175
jalew188
closed
2 months ago
0
FIX use Lumos model for Astral
#174
GeorgWa
closed
2 months ago
0
Development
#173
jalew188
closed
2 months ago
0
Error: '_Pseudo_Bert_Config' object has no attribute '_attn_implementation'
#172
mschwoer
closed
2 months ago
1
Pre commit hooks
#171
jalew188
closed
2 months ago
0
Code formatting
#170
jalew188
closed
3 weeks ago
0
Remove nbdev in peptdeep
#169
jalew188
closed
2 months ago
0
Error in the latest version of huggingface `transformers` due to `no _attn_implementation attribute`.
#168
jalew188
closed
2 months ago
2
Remove nbdev from peptdeep
#167
jalew188
closed
2 months ago
0
Remove nbdev
#166
jalew188
closed
2 months ago
1
Allow change of device for charge models through initialization
#165
mo-sameh
closed
2 months ago
0
Does AlphaPeptDeep support pre-digested FASTA files?
#164
Kokoushin
closed
2 months ago
1
ModelManager.predict_all() modifies dataframe in place
#163
GeorgWa
opened
2 months ago
1
Feat: Add train callbacks
#162
mo-sameh
closed
2 months ago
0
FEAT use inference_mode instead of no_grad
#161
jalew188
closed
2 months ago
0
CHORE comment on why using macos-13 instead of macos-latest and macos-xlarge
#160
jalew188
closed
2 months ago
0
FIX github action failed with `setup-miniconda@v2 to setup-miniconda@v3`
#159
jalew188
closed
3 months ago
0
FIX github action failed with `setup-miniconda@v2 to setup-miniconda@v3`
#158
jalew188
closed
3 months ago
0
github action: setup-miniconda@v2 to setup-miniconda@v3
#157
jalew188
closed
3 months ago
0
save charge model when it exists
#156
mo-sameh
closed
2 months ago
0
Update interface to allow different learning rate schedulers
#155
mo-sameh
closed
2 months ago
0
Increase training paradigm flexibility
#154
mo-sameh
closed
3 months ago
1
Supported fragmentlosstype?
#153
hxxhust163
opened
3 months ago
4
Bump version: 1.1.8 → 1.1.9
#152
jalew188
closed
3 months ago
0
Development
#151
jalew188
closed
3 months ago
0
Use macos arm runer to build one click installer
#150
GeorgWa
closed
3 months ago
0
Missing the documentation on how to use the GUI to train a model for in-silico prediction
#149
michaelsteidel86
opened
4 months ago
3
add hooks for transformers
#148
jalew188
closed
4 months ago
1
Development
#147
jalew188
closed
4 months ago
0
Development
#146
jalew188
closed
5 months ago
0
Transfer learning to refine predicted library
#145
snsipe
opened
5 months ago
2
Generate a library with nonspecific digestion rule?
#144
cctsou
closed
5 months ago
1
Add transfer learning supports for Sage output
#143
jalew188
closed
3 months ago
1
Library translate tsv: IndexError: index 4 is out of bounds for axis 1 with size 4
#142
J-Burgess
opened
5 months ago
1
How to include 3+ fragments?
#141
cctsou
closed
4 months ago
4
Charge pred
#140
jalew188
closed
6 months ago
0
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