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MannLabs
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alphapeptdeep
Deep learning framework for proteomics
Apache License 2.0
101
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19
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Error in 'peptdeep --install-model'
#133
hxxhust163
closed
5 months ago
3
Error in installing by Developer installer
#132
hxxhust163
closed
2 months ago
8
Data integration
#131
HR-RH
closed
5 months ago
3
Development
#130
jalew188
closed
6 months ago
0
Use refined model that contains user-defined mod to generate a predicted library
#129
cctsou
closed
6 months ago
9
Development
#128
jalew188
closed
6 months ago
0
Development
#127
jalew188
closed
6 months ago
0
Development
#126
jalew188
closed
6 months ago
0
Retrain model from a spectral library tsv file containing custom modifications
#125
cctsou
closed
6 months ago
5
Tuning MS2 by low-quality fragment matches on all DIA PSMs at apex_rt resulted in low-quality MS2 prediction
#124
jalew188
opened
6 months ago
1
Value error + Peptdeep is trying to use multiprocess even when it is not selected
#123
Maithy15
closed
6 months ago
2
Development
#122
jalew188
closed
6 months ago
0
how to create evidence and msms.txt files for maxquant search from a fasta
#121
animesh
closed
6 months ago
5
Adding mods into AlphaBase
#120
ehwmatt
closed
6 months ago
5
Error Occurs When Setting 'Min Number of Variable Modifications' to 1
#119
pgarrett-scripps
closed
6 months ago
1
Release of Windows GUI
#118
kostrouc
closed
7 months ago
2
Is it possible to get 1/K0 mobility instead of CCS from AlpahPept CCS predictions?
#116
KarlClauser
closed
7 months ago
3
ValueError: need at most 63 handles, got a sequence of length 102
#115
Maithy15
closed
7 months ago
2
Peptdeep GUI error in new version
#114
Maithy15
closed
6 months ago
6
How does "matched_intensity_df" from ModelManager.train_ms2_model (pretrain_model.py) look like?
#113
HojunYou
closed
9 months ago
1
Windows release failed
#112
jalew188
closed
6 months ago
0
Development
#111
jalew188
closed
10 months ago
0
MSFragger speclib incomaptible with alphaPeptDeep
#110
GeorgWa
closed
10 months ago
1
Development
#109
jalew188
closed
10 months ago
0
New cli
#108
jalew188
closed
10 months ago
2
Crashing on prediction from peptide list
#107
tretyacv
closed
10 months ago
1
calc_precursor_mass changed in AlphaBase https://github.com/MannLabs/alphabase/pull/108
#106
jalew188
closed
10 months ago
0
Observability Prediction
#105
KlemensFroehlich
closed
11 months ago
1
Mzml reading
#104
yangkl96
closed
11 months ago
3
Fragment intensity normalization is faster
#103
yangkl96
closed
11 months ago
0
normalize_fragment_intensities not normalizing intensities
#102
yangkl96
closed
11 months ago
7
Support cli commands in addition to yaml configs
#101
jalew188
closed
10 months ago
1
Re-design CLI and GUI parameters
#100
jalew188
closed
10 months ago
0
Customize dtype for fragment mz/intensity dataframes
#99
jalew188
closed
1 year ago
1
Move unrelated functionalities to other packages
#98
jalew188
closed
10 months ago
1
Issues when running transfer_learn()
#97
mhamaneh
closed
10 months ago
3
Transfer of alphapeptdeep predicted HLA library to DIANN and test with acquired raw files (from Q Exactive™ HF-X mass spectrometer): precursor matrix is blank
#96
marthanik
closed
10 months ago
1
added support for mzml. If redoing transfer_learn with the same files, saves and reloads psm_df and frag_df
#95
yangkl96
closed
11 months ago
9
Adding User defined modificaitions does not seem to work
#94
Maithy15
closed
10 months ago
1
CANNOT loading PSMs and extracting fragments for transfer learning
#93
qazq1
closed
10 months ago
1
Development
#92
jalew188
closed
1 year ago
0
Some library entries don't get translated to a tsv file
#91
gsaxena888
closed
10 months ago
3
Exporting library results from hdf5 to tsv uses a single thread (and therefore takes 95% of processing time, ie 30 min))
#90
gsaxena888
closed
1 year ago
8
More features in ModelInterface
#89
jalew188
closed
1 year ago
0
Transfer learning failed (GUI and CLI)
#88
jalew188
closed
1 year ago
0
model_mgr_nce? what is nce?
#87
yc386
closed
1 year ago
2
Development
#86
jalew188
closed
1 year ago
0
Installers update
#85
jalew188
closed
1 year ago
0
installers v1.0.0: ModuleNotFoundError: No module named 'sklearn.metrics._pairwise_distances_reduction._datasets_pair'
#84
jalew188
closed
1 year ago
1
No global model_mgr
#83
jalew188
closed
1 year ago
0
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