Mathilde-16 STOP_MS_data issues

Mathilde-16 / STOP_MS_data

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Added QC for process-segmentation

#26 jcohenadad closed 3 months ago
0
log file does is not renamed with err. prefix in case of error

#25 jcohenadad opened 3 months ago
0
Output QC of PMJ-based CSA calculation

#24 jcohenadad closed 3 months ago
0
Some data do not follow the BIDS standard

#23 jcohenadad opened 3 months ago
0
Issue with finding NII.GZ files

#22 jcohenadad opened 3 months ago
0
Using PMJ instead of vertebral level

#21 jcohenadad closed 3 months ago
1
Consider using PMJ to bypass vertebral labeling

#20 jcohenadad closed 3 months ago
3
Large repos that includes data

#19 jcohenadad opened 3 months ago
4
unclear what `script.sh` is: the name differs from above: `process_data.sh`

#18 jcohenadad closed 3 months ago
0
unclear what this script is about, what it contains, and where to find it

#17 jcohenadad closed 3 months ago
0
`#!/bin/sh` is not needed at the top of a YAML file.

#16 jcohenadad closed 3 months ago
1
Unclear how the SPINEPS batch is supposed to be used-- and possible redundancy

#15 jcohenadad closed 3 months ago
3
Populate README to understand how to use the scripts

#14 jcohenadad closed 3 months ago
1
why isn’t this applicable to sct_deepseg as well?

#13 jcohenadad closed 3 months ago
2
comparison of segmentation methods

#12 jcohenadad closed 5 months ago
7
wrong indentation

#11 jcohenadad closed 4 months ago
0
Unclear why smoothing is required-- comments needed

#10 jcohenadad closed 4 months ago
4
Unclear what the 'template' file is

#9 jcohenadad closed 4 months ago
5
Name is different from the actual script name

#8 jcohenadad closed 4 months ago
0
i suggest to use the latest sct_deepseg contrast-agnostic model

#7 jcohenadad closed 5 months ago
7
The vertebral labeling doesn’t work for several subject sessions

#6 Mathilde-16 closed 3 months ago
56
Data processing progress : contrast-agnostic-segmentation and vertebral labeling

#5 Mathilde-16 closed 5 months ago
5
Data processing progress : segmentation and vertebral labeling

#4 Mathilde-16 closed 3 months ago
10
Unclear repos structure and multiple version

#3 jcohenadad closed 4 months ago
1
Flag a QC with "Fail" or "Pass" in order to set up the manual segmentation

#2 Mathilde-16 closed 3 months ago
9
Information on data processing progress and problem reporting : the vertebral labeling doesn’t work for several subject sessions

#1 Mathilde-16 closed 3 months ago
2