ModelSEED Model-SEED-core issues

ModelSEED / Model-SEED-core

The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.

http://bionet.mcs.anl.gov/index.php/Model_SEED_Homepage

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issues

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./mdl-loadbiomass

#127 samseaver opened 12 years ago
1
Autocomplete Failing

#126 jamesclulow closed 12 years ago
3
Tell ModelSeed to only use glpk / cplex

#125 devoid opened 12 years ago
2
testsolution option in mdl-autocomplete

#124 samseaver opened 12 years ago
0
ms-whoami

#123 samseaver closed 12 years ago
0
Usage in ModelDriver.pm

#122 samseaver closed 12 years ago
1
[Security] real password prompt for ms-login

#121 devoid closed 12 years ago
0
[Feature request] mdl-listmodels in local database

#120 jplfaria opened 12 years ago
0
Reaction tab in ModelView

#119 samseaver closed 12 years ago
1
User account on biologin-4

#118 samseaver closed 12 years ago
1
Place for packaging extension tools / scripts

#117 devoid opened 12 years ago
0
[Feature request] Find drains reactions function

#116 jplfaria opened 12 years ago
1
Allow append new drains with mdl-changedrains

#115 jplfaria opened 12 years ago
0
Special ids for protons and electrons

#114 samseaver opened 12 years ago
2
Provenance location

#113 samseaver closed 12 years ago
1
Number of characters limit for 'alias' in COMPOUND_ALIAS table

#112 samseaver closed 12 years ago
2
Problem if there's a space in directory names

#111 cshenry closed 12 years ago
1
Genome ids when printing/loading models

#110 samseaver closed 12 years ago
1
ModelSEED Warnings

#109 samseaver opened 12 years ago
1
GLPK on biologin-4

#108 samseaver closed 12 years ago
1
Inconsistencies in 'usage' of functions

#107 samseaver closed 12 years ago
1
User account

#106 samseaver closed 12 years ago
3
Some documentation inconsistencies

#105 mattb112885 opened 13 years ago
0
Java classpath on biologin-4

#104 samseaver closed 12 years ago
1
Two ModelSEEDScripts directories

#103 samseaver opened 13 years ago
0
Spammers on bionet.mcs.anl.gov Main Page.

#102 jamesclulow closed 13 years ago
1
NULL fields in database are returned as undefined in perl code

#101 samseaver closed 12 years ago
1
Limitation of SQLite

#100 samseaver opened 13 years ago
5
Use of dataDirectory in config file

#99 samseaver closed 12 years ago
1
Problem with Biochemistry overwrite

#98 samseaver closed 13 years ago
1
Database defaults

#97 samseaver closed 12 years ago
1
Unable to create account/login

#96 samseaver closed 12 years ago
4
current version of repository no longer contains config directory

#95 samseaver closed 13 years ago
1
Need a script to create a new reaction

#94 mdejongh closed 12 years ago
4
mdlimportmodel Documentation

#93 jamesclulow closed 12 years ago
2
[Feature request] Output of the modelimport

#92 jplfaria closed 13 years ago
3
Need to be able to specify autoCompleteMedia when importing a model

#91 mdejongh closed 12 years ago
4
Assignment of new biomass ids in mdl-importmodel

#90 samseaver closed 12 years ago
1
Use of biomassFile option in loadmodel does not add biomass to model

#89 samseaver closed 12 years ago
5
Sharing models from different private biochemistry databases

#88 samseaver closed 12 years ago
1
Merging of compounds

#87 samseaver closed 12 years ago
3
Overwrite option in mdl-importmodel not truly working for biochemistry

#86 samseaver opened 13 years ago
2
Biomass not added to reaction_model table

#85 samseaver closed 13 years ago
5
wrong KEGG aliases for Cytidine

#84 mdejongh closed 13 years ago
7
printed media file is not recognized by mdl-loadmedia

#83 samseaver closed 12 years ago
1
[Feature request] Change in output files

#82 jplfaria closed 13 years ago
1
[Feature request] List models user owns

#81 jplfaria closed 12 years ago
0
[Feature request] Misspeling Issue, FBA functions options

#80 jplfaria opened 13 years ago
2
Error message while running non imported (not owned by user) models ./fbacheckgrowth

#79 jplfaria closed 12 years ago
1
mdlparsesbml error

#78 jamesclulow closed 13 years ago
2

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