Mohinta2892 catena issues

Mohinta2892 / catena

Neuron Segmentation, Synaptic Partner Detection and Microtubule tracking for vEM with EM-2-EM translation. Codebase built upon Funke lab's algorithms.

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Make daisy-based segmentation pipeline easier to use

#28 Mohinta2892 opened 2 months ago
0
neuroglancer yaml is not working

#27 Mohinta2892 opened 2 months ago
1
Code replication errors in a different machine - AssertionError: The provided ROI offset is not a multiple of voxel_size

#26 Mohinta2892 closed 3 months ago
0
Code replication errors in a different machine - ValueError: cannot reshape array of size 532480 into shape (64,64,128)

#25 Mohinta2892 opened 3 months ago
0
Code replication errors in a different machine: checkpoint file is a directory

#24 Mohinta2892 closed 3 months ago
0
Docker build issues: Torch

#23 Mohinta2892 opened 3 months ago
0
Daisy ValueError: not enough values to unpack (expected 2, got 1)

#22 Mohinta2892 closed 3 months ago
1
Auto-generate predict configs from train configs

#21 Mohinta2892 closed 3 months ago
1
Make Mongo DB dependency optional

#20 Mohinta2892 opened 4 months ago
0
Add config documentation

#19 Mohinta2892 opened 4 months ago
0
Add all datasets that have been tested on

#18 Mohinta2892 opened 4 months ago
0
Predicter Assertion Error: Roi shape mismatch

#17 Mohinta2892 closed 4 months ago
0
Ground truth corrections for FAFB and HemiBrain

#16 Mohinta2892 opened 4 months ago
0
Model convergence across Old and New GPU architectures

#15 Mohinta2892 opened 4 months ago
1
GT lsds calculated during Single Task Affinity network training

#14 Mohinta2892 opened 4 months ago
0
Waterz install with Python==3.11.*

#13 Mohinta2892 closed 3 months ago
0
Waterz install in Python == 3.10.14

#12 Mohinta2892 closed 3 months ago
1
Add `best_metric_model` script to enable val/tests on held-out post training

#11 Mohinta2892 opened 6 months ago
0
feat: Add mutex and gasp support

#10 Mohinta2892 opened 6 months ago
0
feat: Test onnx export and runtime

#9 Mohinta2892 opened 6 months ago
0
Silence Wandb visualisation at inference

#8 Mohinta2892 opened 6 months ago
2
feat: add and test ACRLSD functionality

#7 Mohinta2892 opened 6 months ago
0
Padding inputs with zeros before prediction causes affinity predictions to wrong

#6 Mohinta2892 opened 7 months ago
0
Docker build: # warning libmamba Could not parse mod/etag header

#5 Mohinta2892 opened 7 months ago
0
Gunpowder AssertionError: Cannot pick a random location, intersection of upstream ROIs is unbounded.

#4 Mohinta2892 opened 8 months ago
2
Wrong filename for predict log saving

#3 Mohinta2892 closed 9 months ago
0
RuntimeError: Cannot re-initialize CUDA in forked subprocess in predict_blockwise

#2 Mohinta2892 closed 9 months ago
0
LSD conda env installation not working

#1 Mohinta2892 closed 9 months ago
0