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NCBI-Hackathons
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EndoVir
Discovery of Novel Endogenous Viruses
MIT License
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Cleaner setup w/o absolute paths
#24
janpb
opened
6 years ago
0
Screening contigs based on length test
#23
npbhavya
opened
6 years ago
0
Made some small changes to allow code to play nice with py 3.5
#22
cganote
closed
6 years ago
0
Cloud specific implementation
#21
DCGenomics
opened
6 years ago
0
Flag to accept fastq.gz files
#20
DCGenomics
closed
6 years ago
3
Preparing virus-only PSSM for motif searches
#19
janpb
closed
6 years ago
3
Add NCBI's ngs-pyhton to replace vdb-dump
#18
janpb
opened
6 years ago
0
Get Spades Working!
#17
DCGenomics
opened
6 years ago
0
Switch to using $ENDOVIR path for everything
#16
DCGenomics
opened
6 years ago
0
Label first set of contigs so you can keep them
#15
DCGenomics
opened
6 years ago
0
Fix runtime error making blastdbs
#14
DCGenomics
closed
6 years ago
1
Write a dependency test
#13
DCGenomics
opened
6 years ago
0
Turn off verbosity when using vdb-dump!
#12
DCGenomics
closed
6 years ago
0
Explain what its doing when you are running tests.
#11
DCGenomics
closed
6 years ago
0
Put downloading of a fresh magicblast copy in the beginning of the software
#10
DCGenomics
closed
6 years ago
1
Run instructions
#9
DCGenomics
closed
6 years ago
0
Critical Feature Expansion: Detection of other contigs as well as individual reads with BUD
#8
DCGenomics
opened
6 years ago
5
Megahit splits extending contig into severap smaller contigs
#7
janpb
opened
6 years ago
1
makeprofiledb : no -parse_seqids
#6
janpb
closed
6 years ago
0
borken working direcotry paths
#5
janpb
closed
6 years ago
0
Removing obsolete aligned reads
#4
janpb
closed
6 years ago
1
makeblastdb: local database and sequence retrieval ruckus
#3
janpb
closed
7 years ago
3
split magicblast and vdb-dump in two separate steps
#2
janpb
closed
6 years ago
1
Getting SRA reads for contig generation after magicBLAST
#1
DCGenomics
closed
6 years ago
2