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NeuroDataDesign
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pan-synapse-f16s17
Detecting synapses from two-fluorescent microscope images.
Apache License 2.0
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streaming feedback on final projects
#58
jovo
opened
7 years ago
0
Deliverables 5/1
#57
rguo123
closed
7 years ago
0
Deliverables 4/24
#56
rguo123
closed
7 years ago
1
Deliverables 4/18
#55
bstadt
closed
7 years ago
3
Deliverables 4/10
#54
rguo123
closed
7 years ago
0
4/3 Deliverables
#53
rguo123
closed
7 years ago
0
3/27 Deliverables
#52
rguo123
closed
7 years ago
0
3/13 Deliverables
#51
rguo123
closed
7 years ago
0
Deliverables 3/6
#50
rguo123
closed
7 years ago
1
Clean up repo
#49
levinwil
opened
7 years ago
0
Deliverables for 2/27
#48
levinwil
closed
7 years ago
4
Deliverable 2/16 & 2/20
#47
bstadt
closed
7 years ago
7
Deliverables 2/13
#46
rguo123
closed
7 years ago
5
Deliverables 2/6
#45
levinwil
closed
7 years ago
3
Change results page to include carousel and NDReg
#44
levinwil
closed
7 years ago
0
HREF link Analyze Button to brain.html and pipeline.py
#43
levinwil
closed
7 years ago
0
Deliverables 1/31
#42
rguo123
closed
7 years ago
0
Deliverables 1/30
#41
rguo123
closed
7 years ago
0
Build opencv2 for docker
#40
rguo123
closed
7 years ago
0
Allow pipeline to accept arguments from command line (for docker)
#39
rguo123
closed
7 years ago
0
create GUI for pLib + cLib + visualization
#38
levinwil
closed
7 years ago
0
create formal unit test for visualize.py
#37
rguo123
closed
7 years ago
0
@jovo Send us 'neuro for n00bs papers'
#36
bstadt
closed
7 years ago
3
Deliverables 1/25
#35
rguo123
closed
7 years ago
0
implement plotly methods
#34
rguo123
closed
7 years ago
0
implement cluster tracking lib with ndreg from notebook in codebase
#33
bstadt
closed
7 years ago
0
remove syspath dependencies outside of project folder
#32
bstadt
opened
7 years ago
0
move full pipeline function into analysis.py
#31
bstadt
closed
7 years ago
0
create unit tests for cLib functions
#30
levinwil
closed
7 years ago
0
Investigate rate of error in plos pipeline on volume edges
#29
bstadt
closed
7 years ago
0
Generate wrapper functions to convert between numpy arrays and itk images
#28
bstadt
closed
7 years ago
1
ignore
#27
rguo123
closed
7 years ago
0
make a nice looking markdown readme
#26
bstadt
closed
7 years ago
0
Add multi-dimensional usability to mouseVis lib
#25
levinwil
closed
7 years ago
0
Create requirements.txt file for dependencies
#24
bstadt
closed
7 years ago
0
Deliverables 1/16
#23
bstadt
closed
7 years ago
2
perform algorithms md analysis on and place results in a jupyter notebook
#22
bstadt
closed
7 years ago
2
develop a new metric for cluster compactness
#21
bstadt
closed
7 years ago
0
write test for density function in connectedLib
#20
bstadt
closed
7 years ago
1
add tests for plotly display
#19
levinwil
closed
7 years ago
0
add tests for cluster class methods
#18
levinwil
closed
7 years ago
0
perform front to back plos pipeline test
#17
bstadt
closed
7 years ago
0
add tests for willsConnectedLib
#16
levinwil
closed
7 years ago
0
generate unit tests for connectLib functions
#15
bstadt
closed
7 years ago
0
create function to get synapse density
#14
bstadt
closed
7 years ago
0
analyze connected components for things like size and density
#13
bstadt
closed
7 years ago
1
reduce output of plos lib to connected components
#12
bstadt
closed
7 years ago
1
write boundary checking in 3d puncta map function
#11
bstadt
closed
7 years ago
0
Research best way to perform reduce step in the clustering library
#10
bstadt
closed
7 years ago
7
Find a way to make voxel splitting in the clustering library more elegant
#9
bstadt
closed
7 years ago
1
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