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NeuroML
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pyNeuroML
A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.
https://docs.neuroml.org/Userdocs/Software/pyNeuroML.html
GNU Lesser General Public License v3.0
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Support visualisation of morphology only files
#398
sanjayankur31
closed
3 days ago
1
Allow visualization of morphology only NML files
#397
sanjayankur31
opened
3 days ago
0
To v1.3.2 and use jnml v0.13.2; pinning numpy<2.0
#396
pgleeson
closed
1 week ago
1
Deps and CI fixes
#395
sanjayankur31
closed
1 week ago
3
ci: tweak pip command
#394
sanjayankur31
closed
1 week ago
0
WIP: testing with py3.13
#393
sanjayankur31
opened
1 week ago
0
Use jnml jar 0.13.1; fixes to allow for cells with external morphology/biophysicalProperties
#392
pgleeson
closed
2 weeks ago
1
ci: update comment bit to also work on PRs from forks
#391
sanjayankur31
closed
2 weeks ago
0
Add `bqbiol.is`
#390
sanjayankur31
closed
3 weeks ago
1
Error: pyneuroml/povray/OverlaySimulation.py:279:31: F821 Undefined name `volts`
#389
sanjayankur31
opened
3 weeks ago
0
Speed up unit tests
#388
sanjayankur31
closed
3 weeks ago
1
ci: add coverage to pull requests
#387
sanjayankur31
closed
3 weeks ago
4
Feat/coverage
#386
sanjayankur31
closed
3 weeks ago
0
Enable coverage info on the repo
#385
sanjayankur31
closed
6 days ago
1
Feat/swc loaderfile Adding SWC loader to load SWC file
#384
AdityaBITMESRA
opened
3 weeks ago
16
chore: linter fixes
#383
sanjayankur31
closed
3 weeks ago
0
Feat/make generate plot clicky
#382
sanjayankur31
closed
3 weeks ago
0
docs: add AdityaBITMESRA as a contributor for code, and review
#381
allcontributors[bot]
closed
3 weeks ago
0
Feat/loadswc Adding SWC loader to load SWC file
#380
AdityaBITMESRA
closed
3 weeks ago
0
Feature Draft/ Use PCA to visualize cell 'upwards'
#379
lej0hn
closed
6 days ago
29
fix(setup.cfg): include template channel file in data
#378
sanjayankur31
closed
3 weeks ago
0
issue 303: plot spikes
#377
sanjayankur31
closed
3 weeks ago
4
Tests on master failing
#376
pgleeson
closed
3 weeks ago
0
Add a SWC loader
#375
sanjayankur31
opened
1 month ago
3
Feat/plotting checks
#374
sanjayankur31
closed
1 month ago
1
Feat/get ks channel states
#373
sanjayankur31
closed
1 month ago
0
Make getting model file list SBML aware
#372
sanjayankur31
opened
1 month ago
0
chore: improve contributing documentation
#371
sanjayankur31
closed
1 month ago
0
docs: add lej0hn as a contributor for code
#370
allcontributors[bot]
closed
1 month ago
0
Implement exporting to Neuroglancer formats
#369
sanjayankur31
opened
1 month ago
1
Better handling of nested if statements in xpp parser
#368
pgleeson
closed
1 month ago
0
Added translate_cell function
#367
lej0hn
closed
1 month ago
10
Added function translate_cell
#366
lej0hn
closed
1 month ago
0
Feat/test animate plots
#365
sanjayankur31
closed
1 month ago
0
docs: add YBCS as a contributor for code, and test
#364
allcontributors[bot]
closed
1 month ago
0
docs: add lej0hn as a contributor for review
#363
allcontributors[bot]
closed
1 month ago
0
Implement vispy based viewing of SWC files
#362
sanjayankur31
opened
1 month ago
2
feat(rotation): allow users to pick if they want a copy
#361
sanjayankur31
closed
1 month ago
2
Add utility function to translate cell to that soma is at origin
#360
sanjayankur31
opened
1 month ago
0
vispy-viewer: make it run in jupyter notebooks using jupyter_rfb
#359
sanjayankur31
opened
1 month ago
0
[Bug] pynml-plotmorph: vispy: no mouse events
#358
Sietse20
opened
1 month ago
3
Add analysis of KineticState channels to `pynml-channelanalysis`
#357
sanjayankur31
opened
1 month ago
0
fix(nml-channel-analysis): include `ionChannelVShift`
#356
sanjayankur31
closed
1 month ago
0
Updates to xpp running/plotting
#355
pgleeson
closed
1 month ago
0
Annotations: completes exporting and extraction of annotations that we use in NeuroML
#354
sanjayankur31
closed
1 month ago
0
More annotation tweaks: remove unused ids, use `rdf:li`
#353
sanjayankur31
closed
2 months ago
0
feat(pynml-modchananalysis): add labels and fix file name
#352
sanjayankur31
closed
1 month ago
2
feat(annotations): improve for use as embedded annotations
#350
sanjayankur31
closed
2 months ago
0
feat(annotations): extend to allow both miriam and biosimulations styles
#349
sanjayankur31
closed
2 months ago
0
animate matplotlib plots
#348
YBCS
closed
1 month ago
5
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